Evidence map›Paper›PMID 31262256›Full record

ArticleBMC infectious diseases2019

A nationwide study of multidrug-resistant tuberculosis in Portugal 2014-2017 using epidemiological and molecular clustering analyses.

Olena Oliveira, Rita Gaio, Carlos Carvalho, Margarida Correia-Neves, Raquel Duarte, Teresa Rito

Abstract read
In one paragraph

Article in BMC infectious diseases, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 2 syntheses or guidelines pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Olena OliveiraPopulation Health Research Domain, Life and Health Sciences Research Institute (ICVS), School of Medicine, University of Minho, Gualtar Campus, 4710-057, Braga, Portugal.
Rita GaioDepartment of Mathematics, Faculty of Sciences, Porto, Portugal.
Carlos CarvalhoDepartment of Public Health, Northern Regional Health Administration, 4000-078, Porto, Portugal.
Margarida Correia-NevesPopulation Health Research Domain, Life and Health Sciences Research Institute (ICVS), School of Medicine, University of Minho, Gualtar Campus, 4710-057, Braga, Portugal.
Raquel DuarteEPIUnit, Instituto de Saúde Pública, Universidade do Porto, 4050-600, Porto, Portugal.
Teresa RitoPopulation Health Research Domain, Life and Health Sciences Research Institute (ICVS), School of Medicine, University of Minho, Gualtar Campus, 4710-057, Braga, Portugal. teresarito@med.uminho.pt.ORCID http://orcid.org/0000-0002-8374-6347

Funding

Fundação para a Ciência e a Tecnologia PTDC/SAU-PUB/29521/2017Fundação para a Ciência e a Tecnologia SFRH/BPD/108126/2015Fundação para a Ciência e a Tecnologia UID/MAT/00144/2013Fundação para a Ciência e a Tecnologia UMINHO/BD/47/2016
6 · The paper itself

Abstract

backgroundIncreasing multidrug-resistant tuberculosis (MDR-TB) incidence is a major threat against TB eradication worldwide. We aim to conduct a detailed MDR-TB study in Portugal, an European country with endemic TB, combining genetic analysis and epidemiological data, in order to assess the efficiency of public health containment of MRD-TB in the country.

methodsWe used published MIRU-VNTR data, that we reanalysed using a phylogenetic analysis to better describe MDR-TB cases transmission occurring in Portugal from 2014 to 2017, further enriched with epidemiological data of these cases.

resultsWe show an MDR-TB transmission scenario, where MDR strains likely arose and are transmitted within local chains. 63% of strains were clustered, suggesting high primary transmission (estimated as 50% using MIRU-VNTR data and 15% considering epidemiological links). These values are higher than those observed across Europe and even for sensitive strains in Portugal using similar methodologies. MDR-TB cases are associated with individuals born in Portugal and evolutionary analysis suggests a local evolution of strains. Consistently the sublineage LAM, the most common in sensitive strains in Europe, is the more frequent in Portugal in contrast with the remaining European MDR-TB picture where immigrant-associated Beijing strains are more common.

conclusionsDespite efforts to track and contain MDR-TB strains in Portugal, their transmission patterns are still as uncontrolled as that of sensitive strains, stressing the need to reinforce surveillance and containment strategies.

Indexed as

AdultAgedBeijingCluster AnalysisFemaleGenotypeHumansMaleMiddle AgedMinisatellite RepeatsMycobacterium tuberculosisPhylogenyPortugalRisk FactorsTransients and MigrantsTuberculosis, Multidrug-ResistantEpidemiologyMultidrug-resistant tuberculosisRisk factorTransmission

Identifiers

PMID31262256
PMCPMC6604307

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.