Evidence map›Paper›PMID 31260485›Full record

ArticlePloS one2019

Biophysical modeling of C. elegans neurons: Single ion currents and whole-cell dynamics of AWCon and RMD.

Martina Nicoletti, Alessandro Loppini, Letizia Chiodo, Viola Folli, Giancarlo Ruocco, Simonetta Filippi

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 50 citations in OpenAlex.

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  9. Subcellular Imaging of Neuronal Calcium Handling In Vivo.Journal of visualized experiments : JoVE · 2023
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Martina NicolettiDepartment of Engineering, Campus Bio-Medico University, Rome, Italy.
Alessandro LoppiniDepartment of Engineering, Campus Bio-Medico University, Rome, Italy.ORCID 0000-0002-8986-2365
Letizia ChiodoDepartment of Engineering, Campus Bio-Medico University, Rome, Italy.ORCID 0000-0002-8278-7075
Viola FolliCenter for Life Nano Science CLNS@Sapienza, Istituto Italiano di Tecnologia - IIT, Rome, Italy.
Giancarlo RuoccoCenter for Life Nano Science CLNS@Sapienza, Istituto Italiano di Tecnologia - IIT, Rome, Italy.
Simonetta FilippiDepartment of Engineering, Campus Bio-Medico University, Rome, Italy.
Università Campus Bio-Medico · ITItalian Institute of Technology · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

C. elegans neuronal system constitutes the ideal framework for studying simple, yet realistic, neuronal activity, since the whole nervous system is fully characterized with respect to the exact number of neurons and the neuronal connections. Most recent efforts are devoted to investigate and clarify the signal processing and functional connectivity, which are at the basis of sensing mechanisms, signal transmission, and motor control. In this framework, a refined modelof whole neuron dynamics constitutes a key ingredient to describe the electrophysiological processes, both at thecellular and at the network scale. In this work, we present Hodgkin-Huxley-based models of ion channels dynamics black, built on data available both from C. elegans and from other organisms, expressing homologous channels. We combine these channel models to simulate the electrical activity oftwo among the most studied neurons in C. elegans, which display prototypical dynamics of neuronal activation, the chemosensory AWCON and the motor neuron RMD. Our model properly describes the regenerative responses of the two cells. We analyze in detail the role of ion currents, both in wild type and in in silico knockout neurons. Moreover, we specifically investigate the behavior of RMD, identifying a heterogeneous dynamical response which includes bistable regimes and sustained oscillations. We are able to assess the critical role of T-type calcium currents, carried by CCA-1 channels, and leakage currents in the regulation of RMD response. Overall, our results provide new insights in the activity of key C. elegans neurons. The developed mathematical framework constitute a basis for single-cell and neuronal networks analyses, opening new scenarios in the in silico modeling of C. elegans neuronal system.

Indexed as

Models, NeurologicalAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsCalcium ChannelsComputer SimulationGene ExpressionIon TransportMotor NeuronsNerve NetPotassium ChannelsSensory Receptor CellsSingle-Cell AnalysisSodium ChannelsSynaptic TransmissionCaenorhabditis elegans ProteinsCalcium ChannelsPotassium ChannelsSodium Channels

Identifiers

PMID31260485
PMCPMC6602206
OpenAlexW2955244609

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.