Evidence map›Paper›PMID 31259017›Full record

ArticleAMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science2019

Deep Learning on Electronic Health Records to Improve Disease Coding Accuracy.

Sina Rashidian, Janos Hajagos, Richard A Moffitt, Fusheng Wang, Kimberly M Noel, Rajarsi R Gupta, Mathew A Tharakan, Joel H Saltz, Mary M Saltz

Abstract read
In one paragraph

Article in AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Identifying risk of opioid use disorder for patients taking opioid medications with deep learning.Journal of the American Medical Informatics Association : JAMIA · 2021
    Article
  7. Deep learning in systems medicine.Briefings in bioinformatics · 2021
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Role of Artificial Intelligence in Kidney Disease.International journal of medical sciences · 2020
    Review
  14. Machine Learning Based Opioid Overdose Prediction Using Electronic Health Records.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2019
    Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Sina RashidianStony Brook University, Stony Brook, NY.
Janos HajagosStony Brook University, Stony Brook, NY.
Richard A MoffittStony Brook University, Stony Brook, NY.
Fusheng WangStony Brook University, Stony Brook, NY.
Kimberly M NoelStony Brook University, Stony Brook, NY.
Rajarsi R GuptaStony Brook University, Stony Brook, NY.
Mathew A TharakanStony Brook University, Stony Brook, NY.
Joel H SaltzStony Brook University, Stony Brook, NY.
Mary M SaltzStony Brook University, Stony Brook, NY.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Characterization of a patient's clinical phenotype is central to biomedical informatics. ICD codes, assigned to inpatient encounters by coders, is important for population health and cohort discovery when clinical information is limited. While ICD codes are assigned to patients by professionals trained and certified in coding there is substantial variability in coding. We present a methodology that uses deep learning methods to model coder decision making and that predicts ICD codes. Our approach predicts codes based on demographics, lab results, and medications, as well as codes from previous encounters. We are able to predict existing codes with high accuracy for all three of the test cases we investigated: diabetes, acute renal failure, and chronic kidney disease. We employed a panel of clinicians, in a blinded manner, to assess ground truth and compared the predictions of coders, model and clinicians. When disparities between the model prediction and coder assigned codes were reviewed, our model outperformed coder assigned ICD codes.

Identifiers

PMID31259017
PMCPMC6568065

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.