Evidence map›Paper›PMID 31257183›Full record

ArticleCell chemical biology2019

Analyzing Resistance to Design Selective Chemical Inhibitors for AAA Proteins.

Rudolf Pisa, Tommaso Cupido, Jonathan B Steinman, Natalie H Jones, Tarun M Kapoor

Abstract read
In one paragraph

Article in Cell chemical biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. CaMKIIβ-mediated Phosphorylation Enhances Protein Stability of Spastin to Promote Neurite Outgrowth.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2025
    Article
  3. Article
  4. Article
  5. The Art and Science of Molecular Docking.Annual review of biochemistry · 2024
    Review
  6. Allosteric activation of VCP, an AAA unfoldase, by small molecule mimicry.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  7. Article
  8. Review
  9. Article
  10. Review
  11. Review
  12. Article
  13. Article
  14. Exploring Ovarian Cancer Cell Resistance to Rhenium Anticancer Complexes.Angewandte Chemie (International ed. in English) · 2020
    Article
  15. Exploring ovarian cancer cell resistance to rhenium anticancer complexes.Angewandte Chemie (Weinheim an der Bergstrasse, Germany) · 2020
    Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Rudolf PisaLaboratory of Chemistry and Cell Biology, The Rockefeller University, New York, NY 10065, USA; Tri-Institutional PhD Program in Chemical Biology, The Rockefeller University, New York, NY 10065, USA.
Tommaso CupidoLaboratory of Chemistry and Cell Biology, The Rockefeller University, New York, NY 10065, USA.
Jonathan B SteinmanLaboratory of Chemistry and Cell Biology, The Rockefeller University, New York, NY 10065, USA; Weill Cornell/Rockefeller/Sloan Kettering Tri-Institutional MD-PhD Program, New York, NY 10065, USA.
Natalie H JonesLaboratory of Chemistry and Cell Biology, The Rockefeller University, New York, NY 10065, USA; Tri-Institutional PhD Program in Chemical Biology, The Rockefeller University, New York, NY 10065, USA.
Tarun M KapoorLaboratory of Chemistry and Cell Biology, The Rockefeller University, New York, NY 10065, USA. Electronic address: kapoor@rockefeller.edu.

Funding

Weill Cornell/Rockefeller/Sloan-Kettering MST ProgramT32GM007739 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI HSU, KATHARINE C · 1985 to 2023
$51.1M
Chemical Biology of Cell Division - Revision - 2R35GM130234 · NIGMS · ROCKEFELLER UNIVERSITY · PI TARUN M. KAPOOR · 2019 to 2026
$6.0M
Studying chromosome function using chemical biologyR01GM098579 · NIGMS · ROCKEFELLER UNIVERSITY · PI KAPOOR, TARUN M. · 2011 to 2018
$3.3M
Tri-Institutional PhD Program in Chemical BiologyT32GM115327 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI TAN, DEREK S · 2015 to 2019
$741k
UPGRADE OF IN-HOUSE X-RAY DIFFRACTION EQUIPMENT: STRUCTURAL BIOLOGYS10RR022321 · NCRR · ROCKEFELLER UNIVERSITY · PI DARST, SETH A. · 2006 to 2006
$330k
Crystallization Robot for the Structural Biology Resource Center at RockefellerS10RR027037 · NCRR · ROCKEFELLER UNIVERSITY · PI OREN, DEENA ABELLS · 2010 to 2010
$147k
NCRR NIH HHS S10 RR022321NCRR NIH HHS S10 RR027037NIGMS NIH HHS R01 GM098579NIGMS NIH HHS R35 GM130234NIGMS NIH HHS T32 GM007739NIGMS NIH HHS T32 GM115327
6 · The paper itself

Abstract

Drug-like inhibitors are often designed by mimicking cofactor or substrate interactions with enzymes. However, as active sites are comprised of conserved residues, it is difficult to identify the critical interactions needed to design selective inhibitors. We are developing an approach, named RADD (resistance analysis during design), which involves engineering point mutations in the target to generate active alleles and testing compounds against them. Mutations that alter compound potency identify residues that make key interactions with the inhibitor and predict target-binding poses. Here, we apply this approach to analyze how diaminotriazole-based inhibitors bind spastin, a microtubule-severing AAA (ATPase associated with diverse cellular activities) protein. The distinct binding poses predicted for two similar inhibitors were confirmed by a series of X-ray structures. Importantly, our approach not only reveals how selective inhibition of the target can be achieved but also identifies resistance-conferring mutations at the early stages of the design process.

Indexed as

AAA ProteinsAdenosine TriphosphatasesAmitroleBiochemical PhenomenaCatalytic DomainCrystallography, X-RayDrug DesignHumansMicrotubulesModels, MolecularPoint MutationProtein EngineeringSpastinTriazolesTubulinAAA ProteinsAdenosine TriphosphatasesAmitroleJNJ-7706621SpastinSPAST protein, humanTriazolesTubulinAAA proteinchemical inhibitordrug designJNJ-7706621mutagenesisresistancespastazolinespastinX-ray crystallography

Identifiers

PMID31257183
PMCPMC6754270

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.