Evidence map›Paper›PMID 31257142›Full record

ArticleCurrent biology : CB2019

Changes throughout a Genetic Network Mask the Contribution of Hox Gene Evolution.

Yang Liu, Margarita Ramos-Womack, Clair Han, Patrick Reilly, Kelly LaRue Brackett, William Rogers, Thomas M Williams, Peter Andolfatto, David L Stern, Mark Rebeiz

Open access · bronzeAbstract read
In one paragraph

Article in Current biology : CB, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 49 citations in OpenAlex.

  1. Article
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  5. Cis-regulatory evolution ofbioRxiv : the preprint server for biology · 2025
    Article
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  14. The GRN concept as a guide for evolutionary developmental biology.Journal of experimental zoology. Part B, Molecular and developmental evolution · 2023
    Article
  15. Article
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  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 1 country.

Yang LiuDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA.
Margarita Ramos-WomackDepartment of Ecology Evolution and Behavior, Princeton University, Princeton, NJ 08544, USA.
Clair HanLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA.
Patrick ReillyLewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA.
Kelly LaRue BrackettDepartment of Molecular Biology, Princeton University, Princeton, NJ 08544, USA.
William RogersDepartment of Biology, University of Dayton, 300 College Park, Dayton, OH 45469, USA.
Thomas M WilliamsDepartment of Biology, University of Dayton, 300 College Park, Dayton, OH 45469, USA.
Peter AndolfattoDepartment of Biological Sciences, Columbia University, Sherman Fairchild Center for Life Sciences, 1212 Amsterdam Avenue, New York, NY 10027, USA.
David L SternJanelia Research Campus of the Howard Hughes Medical Institute, 19700 Helix Drive, Ashburn, VA 20147, USA. Electronic address: sternd@janelia.hhmi.org.
Mark RebeizDepartment of Biological Sciences, University of Pittsburgh, Pittsburgh, PA 15260, USA. Electronic address: rebeiz@pitt.edu.
Princeton University · USUniversity of Dayton · USUniversity of Pittsburgh · USColumbia University · USHelix (United States) · US

Funding

Dissecting the molecular basis and assembly of a complex morphological traitR01GM114093 · NIGMS · PRINCETON UNIVERSITY · PI ANDOLFATTO, PETER, REBEIZ, MARK J · 2015 to 2018
$1.8M
Howard Hughes Medical InstituteNIGMS NIH HHS R01 GM114093
6 · The paper itself

Abstract

Hox genes pattern the anterior-posterior axis of animals and are posited to drive animal body plan evolution, yet their precise role in evolution has been difficult to determine. Here, we identified evolutionary modifications in the Hox gene Abd-B that dramatically altered its expression along the body plan of Drosophila santomea. Abd-B is required for pigmentation in Drosophila yakuba, the sister species of D. santomea, and changes to Abd-B expression would be predicted to make large contributions to the loss of body pigmentation in D. santomea. However, manipulating Abd-B expression in current-day D. santomea does not affect pigmentation. We attribute this epistatic interaction to four other genes within the D. santomea pigmentation network, three of which have evolved expression patterns that do not respond to Abd-B. Our results demonstrate how body plans may evolve through small evolutionary steps distributed throughout Hox-regulated networks. Polygenicity and epistasis may hinder efforts to identify genes and mechanisms underlying macroevolutionary traits.

Indexed as

Evolution, MolecularGene Regulatory NetworksAnimalsDrosophilaEpistasis, GeneticFemaleGenes, HomeoboxMalePigmentation

Identifiers

PMID31257142
PMCPMC6624651
OpenAlexW2953723424

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.