Evidence map›Paper›PMID 31255707›Full record

ArticleJournal of proteomics2019

Identification of PKCα-dependent phosphoproteins in mouse retina.

Colin M Wakeham, Phillip A Wilmarth, Jennifer M Cunliffe, John E Klimek, Gaoying Ren, Larry L David, Catherine W Morgans

Open access · greenAbstract read
In one paragraph

Article in Journal of proteomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Mass spectrometry-based retina proteomics.Mass spectrometry reviews · 2023
    Review
  4. Article
  5. Article
  6. Putative role of natural products as Protein Kinase C modulator in different disease conditions.Daru : journal of Faculty of Pharmacy, Tehran University of Medical Sciences · 2021
    Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Colin M WakehamDepartment of Physiology and Pharmacology, Oregon Health and Science University, Portland, OR 97239, USA.
Phillip A WilmarthProteomics Shared Resource, Oregon Health and Science University, Portland, OR 97239, USA.
Jennifer M CunliffeProteomics Shared Resource, Oregon Health and Science University, Portland, OR 97239, USA.
John E KlimekProteomics Shared Resource, Oregon Health and Science University, Portland, OR 97239, USA.
Gaoying RenDepartment of Physiology and Pharmacology, Oregon Health and Science University, Portland, OR 97239, USA.
Larry L DavidProteomics Shared Resource, Oregon Health and Science University, Portland, OR 97239, USA; Department of Biochemistry and Molecular Biology, Oregon Health and Science University, Portland, OR 97239, USA.
Catherine W MorgansDepartment of Physiology and Pharmacology, Oregon Health and Science University, Portland, OR 97239, USA. Electronic address: morgansc@ohsu.edu.
Oregon Health & Science University · US

Funding

Proteomics CoreP30EY010572 · NEI · OREGON HEALTH & SCIENCE UNIVERSITY · PI Kate E Keller · 1995 to 2026
$19.4M
Molecular mechanisms of retinal ON-bipolar cell signalingR01EY029985 · NEI · OREGON HEALTH & SCIENCE UNIVERSITY · PI DUVOISIN, ROBERT M, MORGANS, CATHERINE W · 2019 to 2023
$2.6M
Translational Vision Science Research at Oregon Health & Science UniversityT32EY023211 · NEI · OREGON HEALTH & SCIENCE UNIVERSITY · PI Yali Jia, Kate E Keller · 2013 to 2026
$2.4M
Effects of autoantibodies on synaptic transmission in the retinaR01EY022369 · NEI · OREGON HEALTH & SCIENCE UNIVERSITY · PI MORGANS, CATHERINE W · 2013 to 2016
$1.9M
LTQ Orbitrap VelosS10OD012246 · OD · OREGON HEALTH & SCIENCE UNIVERSITY · PI DAVID, LARRY L · 2012 to 2012
$854k
Leica SP8 Confocal Imaging SystemS10OD023695 · OD · OREGON HEALTH & SCIENCE UNIVERSITY · PI MORGANS, CATHERINE W · 2017 to 2017
$589k
NEI NIH HHS P30 EY010572NEI NIH HHS R01 EY022369NEI NIH HHS R01 EY029985NEI NIH HHS T32 EY023211NIH HHS S10 OD012246NIH HHS S10 OD023695
6 · The paper itself

Abstract

Adjusting to a wide range of light intensities is an essential feature of retinal rod bipolar cell (RBC) function. While persuasive evidence suggests this modulation involves phosphorylation by protein kinase C-alpha (PKCα), the targets of PKCα phosphorylation in the retina have not been identified. PKCα activity and phosphorylation in RBCs was examined by immunofluorescence confocal microscopy using a conformation-specific PKCα antibody and antibodies to phosphorylated PKC motifs. PKCα activity was dependent on light and expression of TRPM1, and RBC dendrites were the primary sites of light-dependent phosphorylation. PKCα-dependent retinal phosphoproteins were identified using a phosphoproteomics approach to compare total protein and phosphopeptide abundance between phorbol ester-treated wild type and PKCα knockout (PKCα-KO) mouse retinas. Phosphopeptide mass spectrometry identified over 1100 phosphopeptides in mouse retina, with 12 displaying significantly greater phosphorylation in WT compared to PKCα-KO samples. The differentially phosphorylated proteins fall into the following functional groups: cytoskeleton/trafficking (4 proteins), ECM/adhesion (2 proteins), signaling (2 proteins), transcriptional regulation (3 proteins), and homeostasis/metabolism (1 protein). Two strongly differentially expressed phosphoproteins, BORG4 and TPBG, were localized to the synaptic layers of the retina, and may play a role in PKCα-dependent modulation of RBC physiology. Data are available via ProteomeXchange with identifier PXD012906. SIGNIFICANCE: Retinal rod bipolar cells (RBCs), the second-order neurons of the mammalian rod visual pathway, are able to modulate their sensitivity to remain functional across a wide range of light intensities, from starlight to daylight. Evidence suggests that this modulation requires the serine/threonine kinase, PKCα, though the specific mechanism by which PKCα modulates RBC physiology is unknown. This study examined PKCα phosophorylation patterns in mouse rod bipolar cells and then used a phosphoproteomics approach to identify PKCα-dependent phosphoproteins in the mouse retina. A small number of retinal proteins showed significant PKCα-dependent phosphorylation, including BORG4 and TPBG, suggesting a potential contribution to PKCα-dependent modulation of RBC physiology.

Indexed as

Protein Processing, Post-TranslationalAnimalsMiceMice, 129 StrainMice, Inbred C57BLMice, KnockoutPhosphoproteinsPhosphorylationProtein Kinase C-alphaProteomeRetinaRetinal Bipolar CellsRetinal Rod Photoreceptor CellsTRPM Cation ChannelsPhosphoproteinsProtein Kinase C-alphaProteomeTrpm1 protein, mouseTRPM Cation ChannelsBORG4Protein kinase C-alphaQuantitative phosphoproteomicsRetinaRod bipolar cellTPBG

Identifiers

PMID31255707
PMCPMC7252471
OpenAlexW2954564383

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.