Evidence map›Paper›PMID 31255281›Full record

ArticleBiochemical and biophysical research communications2019

hnRNP L-mediated RNA switches function as a hypoxia-induced translational regulon.

Kadiam C Venkata Subbaiah, Jiangbin Wu, Alka Potdar, Peng Yao

Open access · greenAbstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Acute severe hypoglycemia alters mouse brain microvascular proteome.Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism · 2024
    Article
  4. Article
  5. hnRNPL expression dynamics in the embryo and placenta.Gene expression patterns : GEP · 2023
    Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Mammalian RNA switches: Molecular rheostats in gene regulation, disease, and medicine.Computational and structural biotechnology journal · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Kadiam C Venkata SubbaiahAab Cardiovascular Research Institute, Department of Medicine, Department of Biochemistry and Biophysics, Center for RNA Biology, Center for Biomedical Informatics, University of Rochester Medical Center, Rochester, NY, USA.
Jiangbin WuAab Cardiovascular Research Institute, Department of Medicine, Department of Biochemistry and Biophysics, Center for RNA Biology, Center for Biomedical Informatics, University of Rochester Medical Center, Rochester, NY, USA.
Alka PotdarDepartment of Biomedical Engineering, Case Western Reserve University, Cleveland, OH, USA.
Peng YaoAab Cardiovascular Research Institute, Department of Medicine, Department of Biochemistry and Biophysics, Center for RNA Biology, Center for Biomedical Informatics, University of Rochester Medical Center, Rochester, NY, USA. Electronic address: peng_yao@urmc.rochester.edu.
University of Rochester Medical Center · USCase Western Reserve University · US

Funding

Role of miR-574-Fam210a axis in cardiac hypertrophy and remodelingR01HL132899 · NHLBI · UNIVERSITY OF ROCHESTER · PI YAO, PENG · 2018 to 2021
$1.5M
Translational Control of Cardiac FibrosisR01HL147954 · NHLBI · UNIVERSITY OF ROCHESTER · PI YAO, PENG · 2019 to 2022
$1.5M
Role of miR-574 driver and passenger strands in cardiac hypertrophyR56HL132899 · NHLBI · UNIVERSITY OF ROCHESTER · PI YAO, PENG · 2016 to 2016
$384k
NHLBI NIH HHS R01 HL132899NHLBI NIH HHS R01 HL147954NHLBI NIH HHS R56 HL132899
6 · The paper itself

Abstract

The GAIT (gamma-interferon-activated inhibitor of translation) complex or miR-297-RISC (RNA-induced silencing complex), together with hnRNP L or hnRNP L-bearing complex, operates an RNA switch in myeloid cells that regulates stress-dependent expression of vascular endothelial growth factor-A (VEGFA). Here, we have shown that hnRNP L directs multiple hypoxia-inducible RNA switches simultaneously and regulates expression of these oncogenic genes in addition to VEGFA. Bioinformatic and polysome profiling-microarray screens have identified DNM1L (Dynamin 1-like) and PHF21A (PHD finger protein 21A) mRNAs as regulated at the translational level by GAIT-dependent, hnRNP L-directed RNA switches. We have also uncovered CDK6 (Cyclin dependent kinase 6), MKLN1 (Muskelin 1) and EIF5 (Eukaryotic initiation factor 5) as novel miR-297-dependent, hnRNP L-directed RNA switch transcripts. Src Kinase is required for the phosphorylation of hnRNP L and activation of the RNA switch pathway. Knockdown of hnRNP L sensitizes the human U937 monocytic cells under hypoxia stress but not in normoxia via inducing cell apoptosis partially due to the reduced translation of hnRNP L target mRNAs. Collectively, our findings suggest that commonly controlled genes by the hnRNP L-directed RNA switches form a translational regulon that promotes hypoxia resistance and cell survival.

Indexed as

Protein BiosynthesisRegulonApoptosisCell Adhesion MoleculesCell HypoxiaDynaminsEukaryotic Initiation Factor-5Gene Expression ProfilingHeterogeneous-Nuclear Ribonucleoprotein LHistone DeacetylasesHumansIntracellular Signaling Peptides and ProteinsRNARNA InterferenceRNA, MessengerU937 CellsCell Adhesion MoleculesDNM1L protein, humanDynaminsEukaryotic Initiation Factor-5Heterogeneous-Nuclear Ribonucleoprotein LHistone DeacetylasesIntracellular Signaling Peptides and ProteinsMKLN1 protein, humanPHF21A protein, humanRNARNA, MessengerVascular Endothelial Growth Factor AEPRShnRNP LHypoxiamicroRNARNA switchTranslation

Identifiers

PMID31255281
PMCPMC6646067
OpenAlexW2955228337

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.