Evidence map›Paper›PMID 31254375›Full record

Observational studyMolecular genetics & genomic medicine2019

Identification of rare copy number variations reveals PJA2, APCS, SYNPO, and TAC1 as novel candidate genes in Autism Spectrum Disorders.

Tania Bitar, Walid Hleihel, Sylviane Marouillat, Sandrine Vonwill, Marie-Laure Vuillaume, Michel Soufia, Patrick Vourc'h, Frederic Laumonnier, Christian R Andres

Open access · goldAbstract readObservational Study
In one paragraph

Observational study in Molecular genetics & genomic medicine, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 1 pooled it
1.3field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 1 synthesis or guideline pooled it, 18 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Genes · 2021
    Review
  9. Review
  10. Review
  11. Observational
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Tania BitarINSERM U1253 ibrain, Université de Tours, Tours, France.ORCID 0000-0002-3736-3396
Walid HleihelFaculty of Sciences, Holy Spirit University of Kaslik (USEK), Jounieh, Lebanon.ORCID 0000-0003-0683-4156
Sylviane MarouillatINSERM U1253 ibrain, Université de Tours, Tours, France.
Sandrine VonwillINSERM U1253 ibrain, Université de Tours, Tours, France.
Marie-Laure VuillaumeINSERM U1253 ibrain, Université de Tours, Tours, France.ORCID 0000-0003-1080-972X
Michel SoufiaFaculty of Medicine, Holy spirit University of Kaslik (USEK), Jounieh, Lebanon.
Patrick Vourc'hINSERM U1253 ibrain, Université de Tours, Tours, France.
Frederic LaumonnierINSERM U1253 ibrain, Université de Tours, Tours, France.
Christian R AndresINSERM U1253 ibrain, Université de Tours, Tours, France.ORCID 0000-0002-5062-3156
Université de Tours · FRHoly Spirit University of Kaslik · LB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThere is a strong evidence for genetic factors as the main causes of Autism Spectrum Disorders (ASD). To date, hundreds of genes have been identified either by copy number variations (CNVs) and/or single nucleotide variations. However, despite all the findings, the genetics of these disorders have not been totally explored.

methodsThus, the aim of our work was to identify rare CNVs and genes present in these regions in ASD children, using a high-resolution comparative genomic hybridization technique and quantitative PCR (qPCR) approach.

resultsOur results have shown 60-70 chromosomal aberrations per patient. We have initially selected 66 CNVs that have been further assessed using qPCR. Finally, we have validated 22 CNVs including 11 deletions and 11 duplications. Ten CNVs are de novo, 11 are inherited and one of unknown origin of transmission. Among the CNVs detected, novel ASD candidate genes PJA2, SYNPO, APCS, and TAC1 have been identified in our group of Lebanese patients. In addition, previously described CNVs have been identified containing genes such as SHANK3, MBP, CHL1, and others.

conclusionOur study broadens the population spectrum of studied ASD patients and adds new candidates at the list of genes contributing to these disorders.

Indexed as

Genetic Predisposition to DiseaseAdultAgedAutism Spectrum DisorderChildComparative Genomic HybridizationDNA Copy Number VariationsFemaleHumansLebanonMaleMicrofilament ProteinsMiddle AgedPolymorphism, Single NucleotideReal-Time Polymerase Chain ReactionSerum Amyloid P-ComponentMicrofilament ProteinsPJA2 protein, humanSerum Amyloid P-ComponentSYNPO protein, humanTAC1 protein, humanTachykininsUbiquitin-Protein LigasesAPCSAutism Spectrum DisordersCGHarraycopy number variationsPJA2SYNPOTAC1

Identifiers

PMID31254375
PMCPMC6687626
OpenAlexW2955681816

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.