Evidence map›Paper›PMID 31254296›Full record

ArticleMolecular microbiology2019

The dormancy-specific regulator, SutA, is intrinsically disordered and modulates transcription initiation in Pseudomonas aeruginosa.

Megan Bergkessel, Brett M Babin, David VanderVelde, Michael J Sweredoski, Annie Moradian, Roxana Eggleston-Rangel, Sonja Hess, David A Tirrell, Irina Artsimovitch, Dianne K Newman

Open access · bronzeAbstract read
In one paragraph

Article in Molecular microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.4field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Microbial life in slow and stopped lanes.Trends in microbiology · 2024
    Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Heat-shock proteases promote survival ofProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  10. Transcription of Bacterial Chromatin.Journal of molecular biology · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Megan BergkesselDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.
Brett M BabinDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA, USA.ORCID 0000-0002-4133-6665
David VanderVeldeDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA, USA.
Michael J SweredoskiProteome Exploration Laboratory, Beckman Institute, California Institute of Technology, Pasadena, CA, USA.
Annie MoradianProteome Exploration Laboratory, Beckman Institute, California Institute of Technology, Pasadena, CA, USA.
Roxana Eggleston-RangelProteome Exploration Laboratory, Beckman Institute, California Institute of Technology, Pasadena, CA, USA.
Sonja HessProteome Exploration Laboratory, Beckman Institute, California Institute of Technology, Pasadena, CA, USA.
David A TirrellDivision of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA, USA.
Irina ArtsimovitchDepartment of Microbiology and The Center for RNA Biology, The Ohio State University, Columbus, OH, USA.ORCID 0000-0002-8604-0980
Dianne K NewmanDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, USA.ORCID 0000-0003-1647-1918
California Institute of Technology · USThe Ohio State University · US

Funding

Mechnanism of transcript elongation control by RfaHR01GM067153 · NIGMS · OHIO STATE UNIVERSITY · PI IRINA ARTSIMOVITCH · 2003 to 2026
$8.0M
Biological mechanisms and consequences of efficient extracellular electron transfer in Pseudomonas aeruginosaR01AI127850 · NIAID · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI Dianne K Newman · 2017 to 2026
$5.6M
Geobiological approaches to understanding pulmonary infections in situR01HL117328 · NHLBI · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI NEWMAN, DIANNE K · 2012 to 2016
$2.1M
NHLBI NIH HHS R01 HL117328NIAID NIH HHS R01 AI127850NIGMS NIH HHS R01 GM067153
6 · The paper itself

Abstract

Though most bacteria in nature are nutritionally limited and grow slowly, our understanding of core processes like transcription comes largely from studies in model organisms doubling rapidly. We previously identified a small protein of unknown function, SutA, in a screen of proteins synthesized in Pseudomonas aeruginosa during dormancy. SutA binds RNA polymerase (RNAP), causing widespread changes in gene expression, including upregulation of the ribosomal RNA genes. Here, using biochemical and structural methods, we examine how SutA interacts with RNAP and the functional consequences of these interactions. We show that SutA comprises a central α-helix with unstructured N- and C-terminal tails, and binds to the β1 domain of RNAP. It activates transcription from the rrn promoter by both the housekeeping sigma factor holoenzyme (Eσ

Indexed as

Gene Expression Regulation, BacterialTranscription, GeneticBacterial ProteinsDNA-Directed RNA PolymerasesPromoter Regions, GeneticPseudomonas aeruginosaSigma FactorTranscriptional ActivationBacterial ProteinsDNA-Directed RNA PolymerasesSigma Factor

Identifiers

PMID31254296
PMCPMC6736744
OpenAlexW2955034372

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.