Evidence map›Paper›PMID 31253804›Full record

ArticleNature communications2019

Structure of the substrate-engaged SecA-SecY protein translocation machine.

Chengying Ma, Xiaofei Wu, Dongjie Sun, Eunyong Park, Marco A Catipovic, Tom A Rapoport, Ning Gao, Long Li

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
9.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 83 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Liganded LolCDE structures reveal a common substrate-LolE interaction guiding bacterial lipoprotein transport.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Structural basis of SecA-mediated protein translocation.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  14. Mechanism of Protein Translocation by the Sec61 Translocon Complex.Cold Spring Harbor perspectives in biology · 2023
    Review
  15. Specific biomarker mining and rapid detection ofFrontiers in microbiology · 2023
    Article
  16. Detection and Multigene Typing of 'Pathogens (Basel, Switzerland) · 2022
    Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Chengying MaState Key Laboratory of Membrane Biology, Peking-Tsinghua Center for Life Sciences, School of Life Sciences, Peking University, Beijing, China.
Xiaofei WuState Key Laboratory of Membrane Biology, Peking-Tsinghua Center for Life Sciences, School of Life Sciences, Peking University, Beijing, China.
Dongjie SunState Key Laboratory of Membrane Biology, Peking-Tsinghua Center for Life Sciences, School of Life Sciences, Peking University, Beijing, China.
Eunyong ParkUniversity of California-Berkeley, Stanley Hall, Berkeley, CA, 94720, USA.
Marco A CatipovicDepartment of Cell Biology, Howard Hughes Medical Institute and Harvard Medical School, 240 Longwood Avenue, Boston, MA, 02115, USA.
Tom A RapoportDepartment of Cell Biology, Howard Hughes Medical Institute and Harvard Medical School, 240 Longwood Avenue, Boston, MA, 02115, USA. tom_rapoport@hms.harvard.edu.ORCID http://orcid.org/0000-0001-9911-4216
Ning GaoState Key Laboratory of Membrane Biology, Peking-Tsinghua Center for Life Sciences, School of Life Sciences, Peking University, Beijing, China. gaon@pku.edu.cn.
Long LiState Key Laboratory of Membrane Biology, Peking-Tsinghua Center for Life Sciences, School of Life Sciences, Peking University, Beijing, China. long_li@pku.edu.cn.ORCID http://orcid.org/0000-0003-0595-0948
Peking University · CNHoward Hughes Medical Institute · USUniversity of California, Berkeley · US

Funding

MOLECULAR BIOPHYSICS TRAINING GRANTT32GM008313 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI MURTHY, VENKATESH N · 1989 to 2023
$14.6M
PROTEIN TRANSPORT INTO MAMMALIAN ENDOPLASMIC RETICULUMR01GM052586 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI Tom A Rapoport · 1995 to 2026
$11.9M
China Postdoctoral Science Foundation 2018M631249Ministry of Science and Technology of the People's Republic of China (Chinese Ministry of Science and Technology) 2016YFA0500700National Natural Science Foundation of China (National Science Foundation of China) 31630087National Natural Science Foundation of China (National Science Foundation of China) 31725007National Natural Science Foundation of China (National Science Foundation of China) 31800625National Natural Science Foundation of China (National Science Foundation of China) 31870835NIGMS NIH HHS R01 GM052586NIGMS NIH HHS T32 GM008313U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01GM052586
6 · The paper itself

Abstract

The Sec61/SecY channel allows the translocation of many proteins across the eukaryotic endoplasmic reticulum membrane or the prokaryotic plasma membrane. In bacteria, most secretory proteins are transported post-translationally through the SecY channel by the SecA ATPase. How a polypeptide is moved through the SecA-SecY complex is poorly understood, as structural information is lacking. Here, we report an electron cryo-microscopy (cryo-EM) structure of a translocating SecA-SecY complex in a lipid environment. The translocating polypeptide chain can be traced through both SecA and SecY. In the captured transition state of ATP hydrolysis, SecA's two-helix finger is close to the polypeptide, while SecA's clamp interacts with the polypeptide in a sequence-independent manner by inducing a short β-strand. Taking into account previous biochemical and biophysical data, our structure is consistent with a model in which the two-helix finger and clamp cooperate during the ATPase cycle to move a polypeptide through the channel.

Indexed as

Adenosine TriphosphatasesBacillus subtilisBacterial ProteinsCryoelectron MicroscopyCrystallizationEscherichia coliGene Expression Regulation, BacterialGeobacillusModels, MolecularProtein ConformationProtein TransportSecA ProteinsSEC Translocation ChannelsAdenosine TriphosphatasesBacterial ProteinsSecA ProteinsSEC Translocation Channels

Identifiers

PMID31253804
PMCPMC6599042
OpenAlexW2949100138

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.