Evidence map›Paper›PMID 31253769›Full record

ArticleNature communications2019

Structural basis of TFIIH activation for nucleotide excision repair.

Goran Kokic, Aleksandar Chernev, Dimitry Tegunov, Christian Dienemann, Henning Urlaub, Patrick Cramer

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 104 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
104citing papers in PubMed, 1 pooled it
7.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

104 citing papers in PubMed, 1 synthesis or guideline pooled it, 161 citations in OpenAlex.

  1. Relationship betweenMedicina (Kaunas, Lithuania) · 2024
    Pooled it
  2. DNA Repair Mechanisms.Methods in molecular biology (Clifton, N.J.) · 2027
    Review
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  13. A new crystal form of the DNA-free full-length XPD helicase from Thermoplasma acidophilum.Acta crystallographica. Section F, Structural biology communications · 2026
    Article
  14. Article
  15. Review
  16. Article
  17. Article
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44 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Goran KokicDepartment of Molecular Biology, Max Planck Institute for Biophysical Chemistry, Am Fassberg 11, 37077, Göttingen, Germany.ORCID http://orcid.org/0000-0001-8912-7099
Aleksandar ChernevMax Planck Institute for Biophysical Chemistry, Bioanalytical Mass Spectrometry, Am Fassberg 11, 37077, Göttingen, Germany.
Dimitry TegunovDepartment of Molecular Biology, Max Planck Institute for Biophysical Chemistry, Am Fassberg 11, 37077, Göttingen, Germany.
Christian DienemannDepartment of Molecular Biology, Max Planck Institute for Biophysical Chemistry, Am Fassberg 11, 37077, Göttingen, Germany.
Henning UrlaubMax Planck Institute for Biophysical Chemistry, Bioanalytical Mass Spectrometry, Am Fassberg 11, 37077, Göttingen, Germany.
Patrick CramerDepartment of Molecular Biology, Max Planck Institute for Biophysical Chemistry, Am Fassberg 11, 37077, Göttingen, Germany. patrick.cramer@mpibpc.mpg.de.ORCID http://orcid.org/0000-0001-5454-7755
Max Planck Institute for Biophysical Chemistry · DE

Funding

Deutsche Forschungsgemeinschaft (German Research Foundation) SFB860, SPP1935
6 · The paper itself

Abstract

Nucleotide excision repair (NER) is the major DNA repair pathway that removes UV-induced and bulky DNA lesions. There is currently no structure of NER intermediates, which form around the large multisubunit transcription factor IIH (TFIIH). Here we report the cryo-EM structure of an NER intermediate containing TFIIH and the NER factor XPA. Compared to its transcription conformation, the TFIIH structure is rearranged such that its ATPase subunits XPB and XPD bind double- and single-stranded DNA, consistent with their translocase and helicase activities, respectively. XPA releases the inhibitory kinase module of TFIIH, displaces a 'plug' element from the DNA-binding pore in XPD, and together with the NER factor XPG stimulates XPD activity. Our results explain how TFIIH is switched from a transcription to a repair factor, and provide the basis for a mechanistic analysis of the NER pathway.

Indexed as

DNA RepairAdenosine TriphosphatasesAnimalsCell LineCloning, MolecularCryoelectron MicroscopyDNADNA-Binding ProteinsDNA Excision Repair Protein ERCC-5DNA HelicasesEndonucleasesEscherichia coliGene Expression RegulationHumansInsectaModels, ChemicalAdenosine TriphosphatasesDNADNA-Binding ProteinsDNA Excision Repair Protein ERCC-5DNA HelicasesEndonucleasesERCC2 protein, humanNuclear ProteinsRecombinant ProteinsTranscription FactorsTranscription Factor TFIIHXeroderma Pigmentosum Group A ProteinXeroderma Pigmentosum Group D ProteinXPA protein, humanXPBC-ERCC-3 protein

Identifiers

PMID31253769
PMCPMC6599211
OpenAlexW2953821629

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.