Evidence map›Paper›PMID 31253644›Full record

ArticleThe Journal of biological chemistry2019

Structural basis for the recognition of nectin-like protein-5 by the human-activating immune receptor, DNAM-1.

Felix A Deuss, Gabrielle M Watson, Katharine J Goodall, Isobel Leece, Sayantani Chatterjee, Zhihui Fu, Morten Thaysen-Andersen, Daniel M Andrews, Jamie Rossjohn, Richard Berry

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Felix A DeussInfection and Immunity Program and Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Clayton, Victoria 3800, Australia.
Gabrielle M WatsonInfection and Immunity Program and Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Clayton, Victoria 3800, Australia; Australian Research Council Centre of Excellence in Advanced Molecular Imaging, Monash University, Clayton, Victoria 3800, Australia.
Katharine J GoodallDepartment of Immunology and Pathology, Central Clinical School, Monash University, Melbourne, Victoria 3800, Australia.
Isobel LeeceDepartment of Immunology and Pathology, Central Clinical School, Monash University, Melbourne, Victoria 3800, Australia.
Sayantani ChatterjeeDepartment of Molecular Sciences, Faculty of Science and Engineering, Macquarie University, New South Wales 2109, Australia.
Zhihui FuInfection and Immunity Program and Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Clayton, Victoria 3800, Australia.
Morten Thaysen-AndersenDepartment of Molecular Sciences, Faculty of Science and Engineering, Macquarie University, New South Wales 2109, Australia.
Daniel M AndrewsDepartment of Immunology and Pathology, Central Clinical School, Monash University, Melbourne, Victoria 3800, Australia.
Jamie RossjohnInfection and Immunity Program and Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Clayton, Victoria 3800, Australia; Australian Research Council Centre of Excellence in Advanced Molecular Imaging, Monash University, Clayton, Victoria 3800, Australia; Institute of Infection and Immunity, Cardiff University School of Medicine, Heath Park, Cardiff CF14 4XN, United Kingdom. Electronic address: jamie.rossjohn@monash.edu.
Richard BerryInfection and Immunity Program and Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Monash University, Clayton, Victoria 3800, Australia; Australian Research Council Centre of Excellence in Advanced Molecular Imaging, Monash University, Clayton, Victoria 3800, Australia. Electronic address: richard.berry@monash.edu.
Australian Research Council · AUMonash University · AUAustralian Regenerative Medicine Institute · AUMacquarie University · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nectin and nectin-like (Necl) adhesion molecules are broadly overexpressed in a wide range of cancers. By binding to these adhesion molecules, the immunoreceptors DNAX accessory molecule-1 (DNAM-1), CD96 molecule (CD96), and T-cell immunoreceptor with Ig and ITIM domains (TIGIT) play a crucial role in regulating the anticancer activities of immune effector cells. However, within this axis, it remains unclear how DNAM-1 recognizes its cognate ligands. Here, we determined the structure of human DNAM-1 in complex with nectin-like protein-5 (Necl-5) at 2.8 Å resolution. Unexpectedly, we found that the two extracellular domains (D1-D2) of DNAM-1 adopt an unconventional "collapsed" arrangement that is markedly distinct from those in other immunoglobulin-based immunoreceptors. The DNAM-1/Necl-5 interaction was underpinned by conserved lock-and-key motifs located within their respective D1 domains, but also included a distinct interface derived from DNAM-1 D2. Mutation of the signature DNAM-1 "key" motif within the D1 domain attenuated Necl-5 binding and natural killer cell-mediated cytotoxicity. Altogether, our results have implications for understanding the binding mode of an immune receptor family that is emerging as a viable candidate for cancer immunotherapy.

Indexed as

Antigens, Differentiation, T-LymphocyteImmunity, CellularKiller Cells, NaturalReceptors, VirusAmino Acid MotifsHEK293 CellsHumansK562 CellsMutationProtein BindingProtein DomainsT Lineage-Specific Activation Antigen 1Antigens, Differentiation, T-Lymphocytepoliovirus receptorReceptors, VirusT Lineage-Specific Activation Antigen 1cancer immunotherapyCD226 moleculecell adhesionDNAX accessory molecule-1 (DNAM-1)immunoglobulin foldimmunologynatural killer cells (NK cells)nectin-like protein-5 (NECL-5)protein structurePVR cell adhesion molecule

Identifiers

PMID31253644
PMCPMC6699837
OpenAlexW2954947398

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.