Evidence map›Paper›PMID 31252286›Full record

ArticleEuropean journal of medicinal chemistry2019

The structure-activity profile of mercaptobenzamides' anti-HIV activity suggests that thermodynamics of metabolism is more important than binding affinity to the target.

Herman Nikolayevskiy, Marco Robello, Michael T Scerba, Evan H Pasternak, Mrinmoy Saha, Tracy L Hartman, Caitlin A Buchholz, Robert W Buckheit, Stewart R Durell, Daniel H Appella

Abstract read
In one paragraph

Article in European journal of medicinal chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Herman NikolayevskiySynthetic Bioactive Molecules Section, LBC, NIDDK, NIH, 8 Center Drive, Room 404, Bethesda, MD, 20892, USA.
Marco RobelloSynthetic Bioactive Molecules Section, LBC, NIDDK, NIH, 8 Center Drive, Room 404, Bethesda, MD, 20892, USA.
Michael T ScerbaSynthetic Bioactive Molecules Section, LBC, NIDDK, NIH, 8 Center Drive, Room 404, Bethesda, MD, 20892, USA.
Evan H PasternakSynthetic Bioactive Molecules Section, LBC, NIDDK, NIH, 8 Center Drive, Room 404, Bethesda, MD, 20892, USA.
Mrinmoy SahaSynthetic Bioactive Molecules Section, LBC, NIDDK, NIH, 8 Center Drive, Room 404, Bethesda, MD, 20892, USA.
Tracy L HartmanImQuest Biosciences, 7340 Executive Way, Suite R, Frederick, MD, 21704, USA.
Caitlin A BuchholzImQuest Biosciences, 7340 Executive Way, Suite R, Frederick, MD, 21704, USA.
Robert W BuckheitImQuest Biosciences, 7340 Executive Way, Suite R, Frederick, MD, 21704, USA.
Stewart R DurellLaboratory of Cell Biology, NCI, NIH, 9000 Rockville Pike, Bethesda, MD, 20892, USA.
Daniel H AppellaSynthetic Bioactive Molecules Section, LBC, NIDDK, NIH, 8 Center Drive, Room 404, Bethesda, MD, 20892, USA. Electronic address: appellad@niddk.nih.gov.

Funding

Small Molecular Inactivators of HIVZIADK075135 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI APPELLA, DANIEL H · 2016 to 2025
$7.2M
Multivalent Inhibition of Membrane ReceptorsZICBC011380 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI DURELL, STEWART · 2011 to 2023
$957k
Intramural NIH HHS ZIA DK075135Intramural NIH HHS ZIC BC011380
6 · The paper itself

Abstract

Mercaptobenzamide thioesters and thioethers are chemically simple HIV-1 maturation inhibitors with a unique mechanism of action, low toxicity, and a high barrier to viral resistance. A structure-activity relationship (SAR) profile based on 39 mercaptobenzamide prodrug analogs exposed divergent activity/toxicity roles for the internal and terminal amides. To probe the relationship between antiviral activity and toxicity, we generated an improved computational model for the binding of mercaptobenzamide thioesters (SAMTs) to the HIV-1 NCp7 C-terminal zinc finger, revealing the presence of a second low-energy binding orientation, hitherto undisclosed. Finally, using NMR-derived thiol-thioester exchange equilibrium constants, we propose that thermodynamics plays a role in determining the antiviral activity observed in the SAR profile.

Indexed as

ThermodynamicsAnti-HIV AgentsBenzamidesDose-Response Relationship, DrugHIV-1HumansMicrobial Sensitivity TestsMolecular Dynamics SimulationMolecular StructureStructure-Activity RelationshipAnti-HIV AgentsBenzamidesActivity limitAntiviralHIVMercaptobenzamide prodrugMolecular dynamicsNCp7SAMT

Identifiers

PMID31252286
PMCPMC8132308

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.