Evidence map›Paper›PMID 31251828›Full record

ArticleEnvironmental microbiology2019

Whole-genome sequencing reveals Listeria monocytogenes diversity and allows identification of long-term persistent strains in Brazil.

Anderson C Camargo, Alexandra Moura, Johannetsy Avillan, Nicole Herman, Adelle P McFarland, Srinand Sreevatsan, Douglas R Call, Joshua J Woodward, Marc Lecuit, Luís A Nero

Abstract read
In one paragraph

Article in Environmental microbiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Persistence ofFrontiers in microbiology · 2026
    Review
  4. Article
  5. Article
  6. Review
  7. Microorganisms · 2025
    Review
  8. Genomic Landscape and Antimicrobial Resistance ofFoods (Basel, Switzerland) · 2025
    Article
  9. Genomic characterization ofFrontiers in microbiology · 2024
    Article
  10. Foods (Basel, Switzerland) · 2023
    Review
  11. Genomic Insights intoInternational journal of molecular sciences · 2023
    Article
  12. Prevalence and contamination patterns ofFrontiers in microbiology · 2023
    Article
  13. Genomic and pathogenicity islands ofFrontiers in molecular biosciences · 2023
    Review
  14. Whole-Genome Sequencing-Based Characterization ofApplied and environmental microbiology · 2022
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Anderson C CamargoDepartamento de Veterinária, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil.ORCID 0000-0002-7444-0207
Alexandra MouraInstitut Pasteur, Biology of Infection Unit, Paris, France.ORCID 0000-0003-0339-1230
Johannetsy AvillanPaul G. Allen School for Global Animal Health, Washington State University, Pullman, WA, USA.ORCID 0000-0001-7358-3057
Nicole HermanVeterinary Population Medicine Department, University of Minnesota, St. Paul, MN, USA.
Adelle P McFarlandDepartment of Microbiology, University of Washington, Seattle, WA, USA.ORCID 0000-0001-7534-1158
Srinand SreevatsanDepartment of Pathobiology and Diagnostic Investigation, Michigan State University, East Lansing, MI, USA.ORCID 0000-0002-5162-2403
Douglas R CallPaul G. Allen School for Global Animal Health, Washington State University, Pullman, WA, USA.ORCID 0000-0001-6791-055X
Joshua J WoodwardDepartment of Microbiology, University of Washington, Seattle, WA, USA.ORCID 0000-0002-4630-403X
Marc LecuitInstitut Pasteur, Biology of Infection Unit, Paris, France.ORCID 0000-0002-4491-1063
Luís A NeroDepartamento de Veterinária, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil.ORCID 0000-0002-4954-5824

Funding

TRAINING IN BIOTECHNOLOGY: EMPHASIS ON PROTEIN CHEMISTRYT32GM008336 · NIGMS · WASHINGTON STATE UNIVERSITY · PI CALL, DOUGLAS R. · 1989 to 2023
$8.9M
Conselho Nacional de Desenvolvimento Científico e TecnológicoCoordenação de Aperfeiçoamento de Pessoal de Nível SuperiorFundação de Amparo à Pesquisa do Estado de Minas GeraisNIGMS NIH HHS T32 GM008336
6 · The paper itself

Abstract

Advances in whole-genome sequencing (WGS) technologies have documented genetic diversity and epidemiology of the major foodborne pathogen Listeria monocytogenes (Lm) in Europe and North America, but data concerning South America are scarce. Here, we examined the population structure and genetic diversity of this major foodborne pathogen collected in Brazil. Based on core genome multilocus sequence typing (cgMLST), isolates from lineages I (n = 22; 63%) and II (n = 13; 37%) were distributed into 10 different sublineages (SLs) and represented 31 new cgMLST types (CTs). The most prevalent SLs were SL9 (n = 9; 26%), SL3 (n = 6; 17%) and SL2 and SL218 (n = 5; 14%). Isolates belonging to CTs L2-SL9-ST9-CT4420 and L1-SL315-ST520-CT4429 were collected 3 and 9 years apart, respectively, revealing long-term persistence of Lm in Brazil. Genetic elements associated with stress survival were present in 60% of isolates (57% SSI-1 and 3% SSI-2). Pathogenic islands were present in 100% (LIPI-1), 43% (LIPI-3) and 6% (LIPI-4) of the isolates. Mutations leading to premature stop codons were detected in the prfA and inlA virulence genes. This study is an important contribution to understanding the genomic diversity and epidemiology of Lm in South America. In addition, the results highlight the importance of using WGS to reveal Lm long-term persistence.

Indexed as

BrazilFood MicrobiologyGenetic VariationGenome, BacterialHumansListeria monocytogenesListeriosisMeatMultilocus Sequence TypingVirulenceWhole Genome Sequencing

Identifiers

PMID31251828
PMCPMC7644123

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.