Evidence map›Paper›PMID 31251477›Full record

ArticleMolecular genetics & genomic medicine2019

Functional characterization of a SNP (F51S) found in human alpha 1-antitrypsin.

Hong-Nhung Trinh, Sei-Heon Jang, ChangWoo Lee

Open access · goldAbstract read
In one paragraph

Article in Molecular genetics & genomic medicine, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.1field-weighted citation impact, top 53% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 citations in OpenAlex.

  1. Therapeutic SERPINs: Improving on Nature.Frontiers in cardiovascular medicine · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Hong-Nhung TrinhDepartment of Biomedical Science and Center for Bio-Nanomaterials, Daegu University, Gyeongsan, South Korea.ORCID 0000-0001-8153-9347
Sei-Heon JangDepartment of Biomedical Science and Center for Bio-Nanomaterials, Daegu University, Gyeongsan, South Korea.ORCID 0000-0002-7218-7404
ChangWoo LeeDepartment of Biomedical Science and Center for Bio-Nanomaterials, Daegu University, Gyeongsan, South Korea.ORCID 0000-0002-0872-4500
Daegu University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAlpha 1-antitrypsin (A1AT) deficiency is related to lung and liver diseases, including pulmonary emphysema and liver cirrhosis in humans. Genetic variations including single nucleotide polymorphisms (SNPs) of SERPINA1 are responsible for A1AT deficiency, but the characteristics of the SNPs are not well-understood. Here, we investigated the features of a rare SNP (F51S) of A1AT, which introduces an additional N-glycosylation site in the N-terminal region of A1AT.

methodsWe evaluated the F51S variant compared with the wild-type (WT) A1AT with regard to expression in CHO-K1 cells, trypsin inhibitory activity, polymerization, and thermal stability.

resultsThe recombinant F51S protein expressed in CHO-K1 cells was mostly retained inside cells. The F51S variant had trypsin inhibitory activity, but reduced thermal stability compared with the WT A1AT. The native acrylamide gel data showed that F51S tended to prevent polymerization of A1AT.

conclusionThe results of this study indicate that Phe51 and the surrounding hydrophobic residue cluster plays an important role in the conformation and secretion of A1AT and suggest the harmful effects of a rare F51S SNP in human health.

Indexed as

alpha 1-AntitrypsinAnimalsCHO CellsCricetulusEnzyme AssaysGlycosylationHumansHydrophobic and Hydrophilic InteractionsMutagenesis, Site-DirectedPolymorphism, Single NucleotideProtein MultimerizationProtein StabilityRecombinant ProteinsTrypsinalpha 1-AntitrypsinRecombinant ProteinsSERPINA1 protein, humanTrypsinAlpha 1-antitrypsin deficiencyF51Spolymerizationsingle nucleotide polymorphismthermal stability

Identifiers

PMID31251477
PMCPMC6687665
OpenAlexW2953885581

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.