Evidence map›Paper›PMID 31251384›Full record

ArticleNucleic acids research2019

The PSIPRED Protein Analysis Workbench: 20 years on.

Daniel W A Buchan, David T Jones

Abstract readHistorical Article
In one paragraph

Article in Nucleic acids research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 726 papers.

0numbers the graph read from it
0cells of the map it votes in
726citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

726 citing papers in PubMed.

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  5. Semi-synthesis of the C-terminal region ofRSC chemical biology · 2026
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666 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Daniel W A BuchanUCL Bioinformatics Group, Department of Computer Science, University College London, Gower Street, London WC1E 6BT, UK.
David T JonesUCL Bioinformatics Group, Department of Computer Science, University College London, Gower Street, London WC1E 6BT, UK.

Funding

Biotechnology and Biological Sciences Research Council BB/M011712/1
6 · The paper itself

Abstract

The PSIPRED Workbench is a web server offering a range of predictive methods to the bioscience community for 20 years. Here, we present the work we have completed to update the PSIPRED Protein Analysis Workbench and make it ready for the next 20 years. The main focus of our recent website upgrade work has been the acceleration of analyses in the face of increasing protein sequence database size. We additionally discuss any new software, the new hardware infrastructure, our webservices and web site. Lastly we survey updates to some of the key predictive algorithms available through our website.

Indexed as

Amino Acid SequenceBinding SitesGene OntologyHistory, 21st CenturyInternetModels, MolecularMolecular Sequence AnnotationProtein BindingProtein Conformation, alpha-HelicalProtein Conformation, beta-StrandProtein Interaction Domains and MotifsProteinsSequence AlignmentSequence Homology, Amino AcidSoftwareProteins

Identifiers

PMID31251384
PMCPMC6602445

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.