Evidence map›Paper›PMID 31250230›Full record

ArticleFunctional & integrative genomics2020

Exploiting the reference genome sequence of hexaploid wheat: a proteomic study of flour proteins from the cultivar Chinese Spring.

Susan B Altenbach, Han-Chang Chang, Annamaria Simon-Buss, Toni Mohr, Naxin Huo, Yong Q Gu

Abstract read
In one paragraph

Article in Functional & integrative genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Allelic Analysis of theMolecules (Basel, Switzerland) · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. Targeting Induced Local Lesions in the WheatFrontiers in nutrition · 2022
    Article
  7. Article
  8. A ddRADseq Survey of the Genetic Diversity of Rye (Plants (Basel, Switzerland) · 2021
    Article
  9. Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. What Is Gluten-Why Is It Special?Frontiers in nutrition · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Susan B AltenbachUSDA-ARS Western Regional Research Center, 800 Buchanan Street, Albany, CA, 94710, USA. susan.altenbach@ars.usda.gov.ORCID http://orcid.org/0000-0002-1430-7578
Han-Chang ChangUSDA-ARS Western Regional Research Center, 800 Buchanan Street, Albany, CA, 94710, USA.
Annamaria Simon-BussUSDA-ARS Western Regional Research Center, 800 Buchanan Street, Albany, CA, 94710, USA.
Toni MohrUSDA-ARS Western Regional Research Center, 800 Buchanan Street, Albany, CA, 94710, USA.
Naxin HuoUSDA-ARS Western Regional Research Center, 800 Buchanan Street, Albany, CA, 94710, USA.
Yong Q GuUSDA-ARS Western Regional Research Center, 800 Buchanan Street, Albany, CA, 94710, USA.

Funding

Agricultural Research Service 2030-21430-014-00D
6 · The paper itself

Abstract

Although the economic value of wheat flour is determined by the complement of gluten proteins, these proteins have been challenging to study because of the complexity of the major protein groups and the tremendous sequence diversity among wheat cultivars. The completion of a high-quality wheat genome sequence from the reference wheat Chinese Spring recently facilitated the assembly and annotation of a complete set of gluten protein genes from a single cultivar, making it possible to link individual proteins in the flour to specific gene sequences. In a proteomic analysis of total wheat flour protein from Chinese Spring using quantitative two-dimensional gel electrophoresis combined with tandem mass spectrometry, gliadins or low-molecular-weight glutenin subunits were identified as the predominant proteins in 72 protein spots. Individual spots were associated with 40 of 56 Chinese Spring gene sequences, including 16 of 26 alpha gliadins, 10 of 11 gamma gliadins, six of seven omega gliadins, one of two delta gliadins, and nine of ten LMW-GS. Most genes that were not associated with protein spots were either expressed at low levels in endosperm or encoded proteins with high similarity to other proteins. A wide range of protein accumulation levels were observed and discrepancies between transcript levels and protein levels were noted. This work together with similar studies using other commercial cultivars should provide new insight into the molecular basis of wheat flour quality and allergenic potential.

Indexed as

Electrophoresis, Gel, Two-DimensionalFlourGenome, PlantGliadinPolyploidyProteomicsReference StandardsTandem Mass SpectrometryTriticumGliadin2-DEFlour qualityGliadinsGluten proteinsImmunogenic potentialLow-molecular weight glutenin subunitsMS/MS

Identifiers

PMID31250230
PMCPMC6954139

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.