Evidence map›Paper›PMID 31250033›Full record

ArticleCellular and molecular life sciences : CMLS2020

A novel seed plants gene regulates oxidative stress tolerance in Arabidopsis thaliana.

Neerakkal Sujeeth, Nikolay Mehterov, Saurabh Gupta, Muhammad K Qureshi, Axel Fischer, Sebastian Proost, M Amin Omidbakhshfard, Toshihiro Obata, Maria Benina, Nikola Staykov and 6 more

Open access · hybridAbstract read
In one paragraph

Article in Cellular and molecular life sciences : CMLS, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 7 institutions in 5 countries.

Neerakkal SujeethBioAtlantis Ltd, Clash Industrial Estate, Tralee, Co. Kerry, V92 RWV5, Ireland.
Nikolay MehterovCenter of Plant Systems Biology and Biotechnology, 139 Ruski Blvd, 4000, Plovdiv, Bulgaria.
Saurabh GuptaInstitute of Biochemistry and Biology, University of Potsdam, Karl Liebknecht Str., 24-25, 14476, Potsdam-Golm, Germany.
Muhammad K QureshiDepartment of Plant Breeding & Genetics, Faculty of Agricultural Sciences & Technology, Bahauddin Zakariya University, Bosan Road, Multan, 60800, Punjab, Pakistan.
Axel FischerMax Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany.
Sebastian ProostMax Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany.
M Amin OmidbakhshfardMax Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany.
Toshihiro ObataMax Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany.
Maria BeninaCenter of Plant Systems Biology and Biotechnology, 139 Ruski Blvd, 4000, Plovdiv, Bulgaria.
Nikola StaykovCenter of Plant Systems Biology and Biotechnology, 139 Ruski Blvd, 4000, Plovdiv, Bulgaria.
Salma BalazadehMax Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany.
Dirk WaltherMax Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany.
Alisdair R FernieCenter of Plant Systems Biology and Biotechnology, 139 Ruski Blvd, 4000, Plovdiv, Bulgaria.
Bernd Mueller-RoeberCenter of Plant Systems Biology and Biotechnology, 139 Ruski Blvd, 4000, Plovdiv, Bulgaria.
Jacques HilleDepartment of Molecular Pharmacology, University of Groningen, Antonius Deusinglaan 1, 9713 AV, Groningen, The Netherlands.
Tsanko S GechevCenter of Plant Systems Biology and Biotechnology, 139 Ruski Blvd, 4000, Plovdiv, Bulgaria. tsangech@uni-plovdiv.bg.ORCID http://orcid.org/0000-0002-3328-0243
Max Planck Institute of Molecular Plant Physiology · DECenter of Plant Systems Biology and Biotechnology · BGUniversity of Potsdam · DEBahauddin Zakariya University · PKBioAtlantis (Ireland) · IEPlovdiv University · BGUniversity of Groningen · NL

Funding

Bundesministerium für Bildung und Forschung FKZ: 01D516023AFP7 People: Marie-Curie Actions 329816H2020 Marie Skłodowska-Curie Actions 642901H2020 Spreading Excellence and Widening Participation 739582
6 · The paper itself

Abstract

Oxidative stress can lead to plant growth retardation, yield loss, and death. The atr7 mutant of Arabidopsis thaliana exhibits pronounced tolerance to oxidative stress. Using positional cloning, confirmed by knockout and RNA interference (RNAi) lines, we identified the atr7 mutation and revealed that ATR7 is a previously uncharacterized gene with orthologs in other seed plants but with no homology to genes in lower plants, fungi or animals. Expression of ATR7-GFP fusion shows that ATR7 is a nuclear-localized protein. RNA-seq analysis reveals that transcript levels of genes encoding abiotic- and oxidative stress-related transcription factors (DREB19, HSFA2, ZAT10), chromatin remodelers (CHR34), and unknown or uncharacterized proteins (AT5G59390, AT1G30170, AT1G21520) are elevated in atr7. This indicates that atr7 is primed for an upcoming oxidative stress via pathways involving genes of unknown functions. Collectively, the data reveal ATR7 as a novel seed plants-specific nuclear regulator of oxidative stress response.

Indexed as

Gene Expression Regulation, PlantArabidopsisArabidopsis ProteinsGenes, PlantMutationOxidative StressPlants, Genetically ModifiedSeedsTranscription FactorsArabidopsis ProteinsTranscription FactorsAbiotic stressOxidative stressProgrammed cell deathReactive oxygen species

Identifiers

PMID31250033
PMCPMC7040063
OpenAlexW2953494314

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.