Evidence map›Paper›PMID 31249345›Full record

ArticleScientific reports2019

Lineage tracing analysis of cone photoreceptor associated cis-regulatory elements in the developing chicken retina.

Estie Schick, Sean D McCaffery, Erin E Keblish, Cassandra Thakurdin, Mark M Emerson

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
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  4. Cell Fate of Retinal Progenitor Cells: In Ovo UbC-StarTrack Analysis.International journal of molecular sciences · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Estie SchickBiology Ph.D. Program, Graduate Center, City University of New York, New York, NY, 10016, USA.
Sean D McCafferyBiology Ph.D. Program, Graduate Center, City University of New York, New York, NY, 10016, USA.
Erin E KeblishDepartment of Biology, The City College of New York, City University of New York, New York, NY, 10031, USA.
Cassandra ThakurdinDepartment of Biology, The City College of New York, City University of New York, New York, NY, 10031, USA.
Mark M EmersonBiology Ph.D. Program, Graduate Center, City University of New York, New York, NY, 10016, USA. memerson@ccny.cuny.edu.
City University of New York · USCity College of New York · USThe Graduate Center, CUNY · US

Funding

Cellular/Molecular Basis of Development: Research CenterG12MD007603 · NIMHD · CITY COLLEGE OF NEW YORK · PI PEZZANO, MARK · 2012 to 2017
$11.5M
NIMHD NIH HHS G12 MD007603
6 · The paper itself

Abstract

During vertebrate retinal development, transient populations of retinal progenitor cells with restricted cell fate choices are formed. One of these progenitor populations expresses the Thrb gene and can be identified by activity of the ThrbCRM1 cis-regulatory element. Short-term assays have concluded that these cells preferentially generate cone photoreceptors and horizontal cells, however developmental timing has precluded an extensive cell type characterization of their progeny. Here we describe the development and validation of a recombinase-based lineage tracing system for the chicken embryo to further characterize the lineage of these cells. The ThrbCRM1 element was found to preferentially form photoreceptors and horizontal cells, as well as a small number of retinal ganglion cells. The photoreceptor cell progeny are exclusively cone photoreceptors and not rod photoreceptors, confirming that ThrbCRM1 progenitor cells are restricted from the rod fate. In addition, specific subtypes of horizontal cells and retinal ganglion cells were overrepresented, suggesting that ThrbCRM1 progenitor cells are not only restricted for cell type, but for cell subtype as well.

Indexed as

Cell TrackingRegulatory Sequences, Nucleic AcidAnimalsCell DifferentiationCell LineageChickensGene ExpressionGene Expression Regulation, DevelopmentalGenes, ReporterGene TargetingHomologous RecombinationMicroscopy, FluorescenceRecombinasesRetinal Cone Photoreceptor CellsRecombinases

Identifiers

PMID31249345
PMCPMC6597718
OpenAlexW2953692258

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.