Evidence map›Paper›PMID 31249341›Full record

ArticleScientific reports2019

Coupling of Redox and Structural States in Cytochrome P450 Reductase Studied by Molecular Dynamics Simulation.

Mikuru Iijima, Jun Ohnuki, Takato Sato, Masakazu Sugishima, Mitsunori Takano

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.7field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
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  10. Conformational Landscape of Cytochrome P450 Reductase Interactions.International journal of molecular sciences · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Mikuru IijimaDepartment of Pure and Applied Physics, Waseda University, Tokyo, 169-8555, Japan.
Jun OhnukiDepartment of Pure and Applied Physics, Waseda University, Tokyo, 169-8555, Japan.
Takato SatoDepartment of Pure and Applied Physics, Waseda University, Tokyo, 169-8555, Japan.
Masakazu SugishimaDepartment of Medical Biochemistry, Kurume University School of Medicine, Kurume, Fukuoka, 830-0011, Japan.ORCID http://orcid.org/0000-0002-0840-4929
Mitsunori TakanoDepartment of Pure and Applied Physics, Waseda University, Tokyo, 169-8555, Japan. mtkn@waseda.jp.ORCID http://orcid.org/0000-0001-8855-008X
Waseda University · JPKurume University Medical Center · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cytochrome P450 reductase (CPR) is the key protein that regulates the electron transfer from NADPH to various heme-containing monooxygenases. CPR has two flavin-containing domains: one with flavin adenine dinucleotide (FAD), called FAD domain, and the other with flavin mononucleotide (FMN), called FMN domain. It is considered that the electron transfer occurs via FAD and FMN (NADPH → FAD → FMN → monooxygenase) and is regulated by an interdomain open-close motion. It is generally thought that the structural state is coupled with the redox state, which, however, has not yet been firmly established. In this report, we studied the coupling of the redox and the structural states by full-scale molecular dynamics (MD) simulation of CPR (total 86.4 μs). Our MD result showed that while CPR predominantly adopts the closed state both in the oxidized and reduced states, it exhibits a tendency to open in the reduced state. We also found a correlation between the FAD-FMN distance and the predicted FMN-monooxygenase distance, which is embedded in the equilibrium thermal fluctuation of CPR. Based on these results, a physical mechanism for the electron transfer by CPR is discussed.

Indexed as

Molecular Dynamics SimulationOxidation-ReductionBinding SitesFlavin-Adenine DinucleotideFlavin MononucleotideMolecular Docking SimulationNADPNADPH-Ferrihemoprotein ReductaseProtein BindingProtein ConformationStructure-Activity RelationshipFlavin-Adenine DinucleotideFlavin MononucleotideNADPNADPH-Ferrihemoprotein Reductase

Identifiers

PMID31249341
PMCPMC6597723
OpenAlexW2956066744

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.