Evidence map›Paper›PMID 31249336›Full record

ArticleScientific reports2019

A novel host-adapted strain of Salmonella Typhimurium causes renal disease in olive ridley turtles (Lepidochelys olivacea) in the Pacific.

Thierry M Work, Julie Dagenais, Brian A Stacy, Jason T Ladner, Jeffrey M Lorch, George H Balazs, Elías Barquero-Calvo, Brenda M Berlowski-Zier, Renee Breeden, Natalia Corrales-Gómez and 11 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.7field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Bacterial Infections in Sea Turtles.Veterinary sciences · 2023
    Review
  4. Frontiers in cell and developmental biology · 2023
    Review
  5. Article
  6. Mixed Infection ofVeterinary sciences · 2022
    Article
  7. Global phylogeography of ridley sea turtles (Conservation genetics (Print) · 2022
    Article
  8. Antimicrobial Resistance in Loggerhead Sea Turtles (Animals : an open access journal from MDPI · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 6 institutions in 2 countries.

Thierry M WorkUS Geological Survey, National Wildlife Health Center, Honolulu Field Station, Honolulu, Hawaii, 96850, United States of America. thierry_work@usgs.gov.
Julie DagenaisUS Geological Survey, National Wildlife Health Center, Honolulu Field Station, Honolulu, Hawaii, 96850, United States of America.
Brian A StacyNOAA Fisheries, Office of Protected Resources, University of Florida, Gainesville, Florida, 32603, United States of America.
Jason T LadnerThe Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, Arizona, 86011, United States of America.
Jeffrey M LorchUS Geological Survey, National Wildlife Health Center, Madison, Wisconsin, 53711, United States of America.
George H BalazsGolden Honu Services of Oceania, Honolulu, Hawaii, 96825, United States of America.
Elías Barquero-CalvoEscuela de Medicina Veterinaria (EMV), Universidad Nacional Costa Rica, Heredia, 3000, Costa Rica.ORCID http://orcid.org/0000-0003-4428-3340
Brenda M Berlowski-ZierUS Geological Survey, National Wildlife Health Center, Madison, Wisconsin, 53711, United States of America.
Renee BreedenUS Geological Survey, National Wildlife Health Center, Honolulu Field Station, Honolulu, Hawaii, 96850, United States of America.
Natalia Corrales-GómezParque Marino del Pacífico-Universidad Nacional Costa Rica, Puntarenas, Costa Rica.
Rocio Gonzalez-BarrientosPathology Area National Service of Animal Health (SENASA), Ministry of Agriculture and Livestock, Heredia, 3000, Costa Rica.
Heather S HarrisNOAA Fisheries West Coast Region, Morro Bay, California, United States of America.
Gabriela Hernández-MoraPathology Area National Service of Animal Health (SENASA), Ministry of Agriculture and Livestock, Heredia, 3000, Costa Rica.
Ángel Herrera-UlloaBacteriology Area, National Service of Animal Health (SENASA), Ministry of Agriculture and Livestock, Heredia, 3000, Costa Rica.ORCID http://orcid.org/0000-0003-2375-2945
Shoreh HesamiDepartment of Infectious Diseases and Immunology, College of Veterinary Medicine, University of Florida, Gainesville, Florida, 32603, United States of America.
T Todd JonesNOAA Fisheries, Pacific Islands Fisheries Science Center, Honolulu, Hawaii, 96818, United States of America.
Juan Alberto MoralesEscuela de Medicina Veterinaria (EMV), Universidad Nacional Costa Rica, Heredia, 3000, Costa Rica.
Terry M NortonGeorgia Sea Turtle Center/Jekyll Island Authority, Jekyll Island, Georgia, 31527, United States of America.
Robert A RameyerUS Geological Survey, National Wildlife Health Center, Honolulu Field Station, Honolulu, Hawaii, 96850, United States of America.
Daniel R TaylorUS Geological Survey, National Wildlife Health Center, Madison, Wisconsin, 53711, United States of America.
Thomas B WaltzekDepartment of Infectious Diseases and Immunology, College of Veterinary Medicine, University of Florida, Gainesville, Florida, 32603, United States of America.
United States Geological Survey · USNOAA National Marine Fisheries Service · USUniversidad Nacional · CRMinisterio de Agricultura y Ganadería de Costa Rica · CRUniversity of Florida · USNorthern Arizona University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Salmonella spp. are frequently shed by wildlife including turtles, but S. enterica subsp. enterica serovar Typhimurium or lesions associated with Salmonella are rare in turtles. Between 1996 and 2016, we necropsied 127 apparently healthy pelagic olive ridley turtles (Lepidochelys olivacea) that died from drowning bycatch in fisheries and 44 live or freshly dead stranded turtles from the west coast of North and Central America and Hawaii. Seven percent (9/127) of pelagic and 47% (21/44) of stranded turtles had renal granulomas associated with S. Typhimurium. Stranded animals were 12 times more likely than pelagic animals to have Salmonella-induced nephritis suggesting that Salmonella may have been a contributing cause of stranding. S. Typhimurium was the only Salmonella serovar detected in L. olivacea, and phylogenetic analysis from whole genome sequencing showed that the isolates from L. olivacea formed a single clade distinct from other S. Typhimurium. Molecular clock analysis revealed that this novel clade may have originated as recently as a few decades ago. The phylogenetic lineage leading to this group is enriched for non-synonymous changes within the genomic area of Salmonella pathogenicity island 1 suggesting that these genes are important for host adaptation.

Indexed as

Adaptation, PhysiologicalHost-Pathogen InteractionsAnimalsKidney DiseasesPacific OceanSalmonella typhimuriumTurtles

Identifiers

PMID31249336
PMCPMC6597722
OpenAlexW2953745584

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.