Evidence map›Paper›PMID 31249134›Full record

ArticleScience (New York, N.Y.)2019

Structure of the Cdc48 segregase in the act of unfolding an authentic substrate.

Ian Cooney, Han Han, Michael G Stewart, Richard H Carson, Daniel T Hansen, Janet H Iwasa, John C Price, Christopher P Hill, Peter S Shen

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 111 papers.

0numbers the graph read from it
0cells of the map it votes in
111citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

111 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Substrate-dependent activation of LONP1 informs on proteolytic regulation and ATPase motor function.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  9. Article
  10. Article
  11. Review
  12. Review
  13. Article
  14. Molecular Tweezers Block the Functional Pore of a Protein Machine.Journal of the American Chemical Society · 2025
    Article
  15. Article
  16. Review
  17. Article
  18. Proteolysis in plant immunity.The Plant cell · 2024
    Review
  19. Article
  20. Article

51 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Ian Cooney *Department of Biochemistry, 15 N. Medical Drive East, University of Utah, Salt Lake City, UT 84112, USA.ORCID 0000-0001-8832-0946
Han Han *Department of Biochemistry, 15 N. Medical Drive East, University of Utah, Salt Lake City, UT 84112, USA.ORCID 0000-0003-0361-4254
Michael G StewartDepartment of Biochemistry, 15 N. Medical Drive East, University of Utah, Salt Lake City, UT 84112, USA.ORCID 0000-0001-6581-6332
Richard H CarsonDepartment of Chemistry and Biochemistry, C100 BNSN, Brigham Young University, Provo, UT 84602, USA.
Daniel T HansenDepartment of Biochemistry, 15 N. Medical Drive East, University of Utah, Salt Lake City, UT 84112, USA.ORCID 0000-0003-2635-4264
Janet H IwasaDepartment of Biochemistry, 15 N. Medical Drive East, University of Utah, Salt Lake City, UT 84112, USA.ORCID 0000-0002-4949-7607
John C PriceDepartment of Chemistry and Biochemistry, C100 BNSN, Brigham Young University, Provo, UT 84602, USA.ORCID 0000-0002-6780-5247
Christopher P HillDepartment of Biochemistry, 15 N. Medical Drive East, University of Utah, Salt Lake City, UT 84112, USA. chris@biochem.utah.edu peter.shen@biochem.utah.edu.ORCID 0000-0001-6796-7740
Peter S ShenDepartment of Biochemistry, 15 N. Medical Drive East, University of Utah, Salt Lake City, UT 84112, USA. chris@biochem.utah.edu peter.shen@biochem.utah.edu.ORCID 0000-0002-6256-6910

Funding

X-ray Cryst. CoreP50GM082545 · NIGMS · UNIVERSITY OF UTAH · PI SUNDQUIST, WESLEY I. · 2007 to 2018
$51.1M
Virus TransmissionP50AI150464 · NIAID · UNIVERSITY OF UTAH · PI HOPE, THOMAS · 2019 to 2021
$14.9M
ESCRT-III and MIT Protein Complexes in CytokinesisR01GM112080 · NIGMS · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI CHRISTOPHER P. HILL, WESLEY I. SUNDQUIST · 2014 to 2026
$4.1M
Visualizing the Mechanisms of Protein Quality ControlR35GM133772 · NIGMS · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI Peter Shen · 2019 to 2026
$3.4M
NIAID NIH HHS P50 AI150464NIGMS NIH HHS P50 GM082545NIGMS NIH HHS R01 GM112080NIGMS NIH HHS R35 GM133772
6 · The paper itself

Abstract

The cellular machine Cdc48 functions in multiple biological pathways by segregating its protein substrates from a variety of stable environments such as organelles or multi-subunit complexes. Despite extensive studies, the mechanism of Cdc48 has remained obscure, and its reported structures are inconsistent with models of substrate translocation proposed for other AAA+ ATPases (adenosine triphosphatases). Here, we report a 3.7-angstrom-resolution structure of Cdc48 in complex with an adaptor protein and a native substrate. Cdc48 engages substrate by adopting a helical configuration of substrate-binding residues that extends through the central pore of both of the ATPase rings. These findings indicate a unified hand-over-hand mechanism of protein translocation by Cdc48 and other AAA+ ATPases.

Indexed as

Cryoelectron MicroscopyImmunoprecipitationIntracellular Signaling Peptides and ProteinsProtein DomainsSaccharomyces cerevisiae ProteinsSubstrate SpecificityValosin Containing ProteinCDC48 protein, S cerevisiaeIntracellular Signaling Peptides and ProteinsSaccharomyces cerevisiae ProteinsSHP1 protein, S cerevisiaeValosin Containing Protein

Identifiers

PMID31249134
PMCPMC7362759

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.