Evidence map›Paper›PMID 31249062›Full record

ArticleGenome research2019

Local features determine Ty3 targeting frequency at RNA polymerase III transcription start sites.

Kurt Patterson, Farbod Shavarebi, Christophe Magnan, Ivan Chang, Xiaojie Qi, Pierre Baldi, Virginia Bilanchone, Suzanne B Sandmeyer

Open access · bronzeAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Genome research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

  1. Progresses of transposon research inSynthetic and systems biotechnology · 2026
    Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Kurt PattersonDepartment of Biological Chemistry, School of Medicine, University of California, Irvine, Irvine, California 92697, USA.ORCID 0000-0001-7856-3637
Farbod ShavarebiDepartment of Biological Chemistry, School of Medicine, University of California, Irvine, Irvine, California 92697, USA.ORCID 0000-0003-3627-3097
Christophe MagnanSchool of Information and Computer Sciences, University of California, Irvine, Irvine, California 92697, USA.
Ivan ChangDepartment of Biological Chemistry, School of Medicine, University of California, Irvine, Irvine, California 92697, USA.
Xiaojie QiDepartment of Biological Chemistry, School of Medicine, University of California, Irvine, Irvine, California 92697, USA.
Pierre BaldiSchool of Information and Computer Sciences, University of California, Irvine, Irvine, California 92697, USA.
Virginia BilanchoneDepartment of Biological Chemistry, School of Medicine, University of California, Irvine, Irvine, California 92697, USA.ORCID 0000-0001-9169-3698
Suzanne B SandmeyerDepartment of Biological Chemistry, School of Medicine, University of California, Irvine, Irvine, California 92697, USA.
University of California, Irvine · US

Funding

Univ.of Calif., Irvine Cancer Center Support GrantP30CA062203 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI Melanie Funes · 1994 to 2026
$57.9M
Ty3 Viruslike Particle Morphogenesis and Host InteractionsR01GM033281 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI SANDMEYER, SUZANNE · 1985 to 2013
$4.7M
PacBio RS Single Molecule, Real-Time (SMRT) DNA SequencerS10OD010794 · OD · UNIVERSITY OF CALIFORNIA-IRVINE · PI SANDMEYER, SUZANNE · 2012 to 2012
$600k
High Throughput DNA SequencerS10RR025496 · NCRR · UNIVERSITY OF CALIFORNIA-IRVINE · PI SANDMEYER, SUZANNE · 2009 to 2009
$500k
NCI NIH HHS P30 CA062203NCRR NIH HHS S10 RR025496NIGMS NIH HHS R01 GM033281NIH HHS S10 OD010794
6 · The paper itself

Abstract

Retroelement integration into host genomes affects chromosome structure and function. A goal of a considerable number of investigations is to elucidate features influencing insertion site selection. The

Indexed as

Genome, FungalRetroelementsTranscription, GeneticIntegrasesMutagenesis, InsertionalNucleotide MotifsPlasmidsRNA Polymerase IIIRNA, TransferSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription Factor TFIIIBTranscription Initiation SiteBRF1 protein, S cerevisiaeIntegrasesRetroelementsRNA Polymerase IIIRNA, TransferSaccharomyces cerevisiae ProteinsTranscription Factor TFIIIB

Identifiers

PMID31249062
PMCPMC6673722
OpenAlexW2956030126

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.