Evidence map›Paper›PMID 31249006›Full record

ReviewDevelopment (Cambridge, England)2019

Mapping chromatin modifications at the single cell level.

Connor H Ludwig, Lacramioara Bintu

Open access · bronzeAbstract readReview
In one paragraph

Review in Development (Cambridge, England), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 52 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Single-cell Epigenomic Profiling with High-throughput Droplet scChIP-seq.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  5. Review
  6. Review
  7. Deep Batch Integration and Denoise of Single-Cell RNA-Seq Data.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Article
  8. Review
  9. Review
  10. Article
  11. Introduction to bioimaging-based spatial multi-omic novel methods.Quantitative biology (Beijing, China) · 2023
    Review
  12. Single-Cell Analysis in Immuno-Oncology.International journal of molecular sciences · 2023
    Review
  13. Review
  14. Review
  15. Review
  16. Article
  17. Review
  18. The Mesangial cell - the glomerular stromal cell.Nature reviews. Nephrology · 2021
    Review
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Connor H LudwigDepartment of Bioengineering, Stanford University, Shriram Center, 443 Via Ortega, Rm 042, Stanford, CA 94305, USA.
Lacramioara BintuDepartment of Bioengineering, Stanford University, Shriram Center, 443 Via Ortega, Rm 042, Stanford, CA 94305, USA lbintu@stanford.edu.ORCID 0000-0001-5443-6633
Stanford University · US

Funding

Single-cell analysis and synthetic control of mammalian chromatin dynamics and gene regulationR35GM128947 · NIGMS · STANFORD UNIVERSITY · PI Lacramioara Bintu · 2018 to 2026
$3.1M
NIGMS NIH HHS R35 GM128947
6 · The paper itself

Abstract

Understanding chromatin regulation holds enormous promise for controlling gene regulation, predicting cellular identity, and developing diagnostics and cellular therapies. However, the dynamic nature of chromatin, together with cell-to-cell heterogeneity in its structure, limits our ability to extract its governing principles. Single cell mapping of chromatin modifications, in conjunction with expression measurements, could help overcome these limitations. Here, we review recent advances in single cell-based measurements of chromatin modifications, including optimization to reduce DNA loss, improved DNA sequencing, barcoding, and antibody engineering. We also highlight several applications of these techniques that have provided insights into cell-type classification, mapping modification co-occurrence and heterogeneity, and monitoring chromatin dynamics.

Indexed as

AcetylationAnimalsAntibodiesChromatinCpG IslandsDNADNA MethylationDNA RepairEndonucleasesEpigenesis, GeneticEpigenomeGene Expression ProfilingGene Expression RegulationGenetic EngineeringHistonesHumansAntibodiesChromatinDNAEndonucleasesHistonesChromatin regulationDNA methylationGene regulationHistone modificationsSingle cell detection

Identifiers

PMID31249006
PMCPMC6602357
OpenAlexW2954954878

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.