Evidence map›Paper›PMID 31247951›Full record

ArticleMetabolites2019

Fine-Mapping of the Human Blood Plasma N-Glycome onto Its Proteome.

Karsten Suhre, Irena Trbojević-Akmačić, Ivo Ugrina, Dennis O Mook-Kanamori, Tim Spector, Johannes Graumann, Gordan Lauc, Mario Falchi

Abstract read
In one paragraph

Article in Metabolites, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Karsten SuhreDepartment of Physiology and Biophysics, Weill Cornell Medicine-Qatar, Education City, PO 24144, Doha, Qatar. karsten@suhre.fr.ORCID 0000-0001-9638-3912
Irena Trbojević-AkmačićGenos Ltd, Glycoscience Research Laboratory, BICRO BIOCentar, Borongajska cesta 83H, 10000 Zagreb, Croatia.ORCID 0000-0003-0106-0155
Ivo UgrinaGenos Ltd, Glycoscience Research Laboratory, BICRO BIOCentar, Borongajska cesta 83H, 10000 Zagreb, Croatia.ORCID 0000-0002-9882-2250
Dennis O Mook-KanamoriDepartment of Clinical Epidemiology, Leiden University Medical Centre, P.O. Box 9600, 2300 RC Leiden, The Netherlands.
Tim SpectorDepartment of Twin Research and Genetic Epidemiology, King's College London, SE1 7EHLondon, UK.
Johannes GraumannScientific Service Group Biomolecular Mass Spectrometry, Max Planck Institute for Heart and Lung Research, W.G. Kerckhoff Institute, Ludwigstr. 43, D-61231 Bad Nauheim, Germany.ORCID 0000-0002-3015-5850
Gordan LaucGenos Ltd, Glycoscience Research Laboratory, BICRO BIOCentar, Borongajska cesta 83H, 10000 Zagreb, Croatia.
Mario FalchiDepartment of Twin Research and Genetic Epidemiology, King's College London, SE1 7EHLondon, UK.

Funding

Qatar Foundation Biomedical Research Program' funds at Weill Cornell Medicine in Qatar
6 · The paper itself

Abstract

Most human proteins are glycosylated. Attachment of complex oligosaccharides to the polypeptide part of these proteins is an integral part of their structure and function and plays a central role in many complex disorders. One approach towards deciphering this human glycan code is to study natural variation in experimentally well characterized samples and cohorts. High-throughput capable large-scale methods that allow for the comprehensive determination of blood circulating proteins and their glycans have been recently developed, but so far, no study has investigated the link between both traits. Here we map for the first time the blood plasma proteome to its matching N-glycome by correlating the levels of 1116 blood circulating proteins with 113 N-glycan traits, determined in 344 samples from individuals of Arab, South-Asian, and Filipino descent, and then replicate our findings in 46 subjects of European ancestry. We report protein-specific N-glycosylation patterns, including a correlation of core fucosylated structures with immunoglobulin G (IgG) levels, and of trisialylated, trigalactosylated, and triantennary structures with heparin cofactor 2 (SERPIND2). Our study reveals a detailed picture of protein N-glycosylation and suggests new avenues for the investigation of its role and function in the associated complex disorders.

Indexed as

aptamersglycomicsHILIC-UPLCN-glycosylationpopulation studyproteomicsSOMAscan

Identifiers

PMID31247951
PMCPMC6681129

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.