Evidence map›Paper›PMID 31247897›Full record

ArticleInternational journal of molecular sciences2019

Molecular Inverse Comorbidity between Alzheimer's Disease and Lung Cancer: New Insights from Matrix Factorization.

Alessandro Greco, Jon Sanchez Valle, Vera Pancaldi, Anaïs Baudot, Emmanuel Barillot, Michele Caselle, Alfonso Valencia, Andrei Zinovyev, Laura Cantini

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Fenretinide in Cancer and Neurological Disease: A Two-Face Janus Molecule.International journal of molecular sciences · 2022
    Review
  8. Article
  9. Article
  10. Chronic Respiratory Diseases and Neurodegenerative Disorders: A Primer for the Practicing Clinician.Medical principles and practice : international journal of the Kuwait University, Health Science Centre · 2021
    Review
  11. Review
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Alessandro GrecoDepartment of Physics and INFN, Universitá degli Studi di Torino, via P. Giuria 1, 10125 Turin, Italy. a.greco@dkfz-heidelberg.de.
Jon Sanchez ValleBarcelona Supercomputing Center (BSC), 08034 Barcelona, Spain. jon.sanchez@bsc.es.
Vera PancaldiCentre de Recherches en Cancérologie de Toulouse (CRCT), UMR1037 Inserm, ERL5294 CNRS, 2 Avenue Hubert Curien, 31037 Toulouse, France. vera.pancaldi@inserm.fr.
Anaïs BaudotAix Marseille Université, INSERM, MMG, CNRS, 13005 Marseille, France. anais.baudot@univ-amu.fr.ORCID 0000-0003-0885-7933
Emmanuel BarillotInstitut Curie, PSL Research University, 75005 Paris, France. emmanuel.barillot@curie.fr.ORCID 0000-0003-2724-2002
Michele CaselleDepartment of Physics and INFN, Universitá degli Studi di Torino, via P. Giuria 1, 10125 Turin, Italy. caselle@to.infn.it.ORCID 0000-0001-5488-142X
Alfonso ValenciaBarcelona Supercomputing Center (BSC), 08034 Barcelona, Spain. alfonso.valencia@bsc.es.
Andrei ZinovyevInstitut Curie, PSL Research University, 75005 Paris, France. andrei.zinovyev@curie.fr.ORCID 0000-0002-9517-7284
Laura CantiniInstitut Curie, PSL Research University, 75005 Paris, France. laura.cantini@ens.fr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Matrix factorization (MF) is an established paradigm for large-scale biological data analysis with tremendous potential in computational biology. Here, we challenge MF in depicting the molecular bases of epidemiologically described disease-disease (DD) relationships. As a use case, we focus on the inverse comorbidity association between Alzheimer's disease (AD) and lung cancer (LC), described as a lower than expected probability of developing LC in AD patients. To this day, the molecular mechanisms underlying DD relationships remain poorly explained and their better characterization might offer unprecedented clinical opportunities. To this goal, we extend our previously designed MF-based framework for the molecular characterization of DD relationships. Considering AD-LC inverse comorbidity as a case study, we highlight multiple molecular mechanisms, among which we confirm the involvement of processes related to the immune system and mitochondrial metabolism. We then distinguish mechanisms specific to LC from those shared with other cancers through a pan-cancer analysis. Additionally, new candidate molecular players, such as estrogen receptor (ER), cadherin 1 (CDH1) and histone deacetylase (HDAC), are pinpointed as factors that might underlie the inverse relationship, opening the way to new investigations. Finally, some lung cancer subtype-specific factors are also detected, also suggesting the existence of heterogeneity across patients in the context of inverse comorbidity.

Indexed as

Computational BiologyModels, BiologicalAlgorithmsAlzheimer DiseaseComorbidityHumansLung NeoplasmsAlzheimer’s diseaseinverse comorbiditylung cancermatrix factorizationnetworkstranscriptome

Identifiers

PMID31247897
PMCPMC6650839

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.