Evidence map›Paper›PMID 31246967›Full record

ArticlePloS one2019

Using a continuum model to decipher the mechanics of embryonic tissue spreading from time-lapse image sequences: An approximate Bayesian computation approach.

Tracy L Stepien, Holley E Lynch, Shirley X Yancey, Laura Dempsey, Lance A Davidson

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.6field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Shape, Strain, and Stability: Epithelia Under High Strain.bioRxiv : the preprint server for biology · 2025
    Article
  4. Article
  5. Dynamic forces drive cell and organ morphology changes during embryonic development.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Tracy L StepienDepartment of Mathematics, University of Arizona, Tucson, AZ, United States of America.ORCID 0000-0003-1683-0896
Holley E LynchDepartment of Physics, Stetson University, DeLand, FL, United States of America.ORCID 0000-0002-6908-8827
Shirley X YanceyDepartment of Bioengineering, University of Pittsburgh, Pittsburgh, PA, United States of America.
Laura DempseyDepartment of Bioengineering, University of Pittsburgh, Pittsburgh, PA, United States of America.ORCID 0000-0001-7773-0317
Lance A DavidsonDepartment of Bioengineering, University of Pittsburgh, Pittsburgh, PA, United States of America.
University of Pittsburgh · USStetson University · USUniversity of Arizona · US

Funding

The Biomechanics of morphogenesis in the frogR01HD044750 · NICHD · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI DAVIDSON, LANCE A. · 2005 to 2020
$3.8M
Biophysics of development buffering: Temperature as a tool to study how the cytosR21ES019259 · NIEHS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI DAVIDSON, LANCE A. · 2010 to 2011
$404k
NICHD NIH HHS R01 HD044750NIEHS NIH HHS R21 ES019259
6 · The paper itself

Abstract

Advanced imaging techniques generate large datasets capable of describing the structure and kinematics of tissue spreading in embryonic development, wound healing, and the progression of many diseases. These datasets can be integrated with mathematical models to infer biomechanical properties of the system, typically identifying an optimal set of parameters for an individual experiment. However, these methods offer little information on the robustness of the fit and are generally ill-suited for statistical tests of multiple experiments. To overcome this limitation and enable efficient use of large datasets in a rigorous experimental design, we use the approximate Bayesian computation rejection algorithm to construct probability density distributions that estimate model parameters for a defined theoretical model and set of experimental data. Here, we demonstrate this method with a 2D Eulerian continuum mechanical model of spreading embryonic tissue. The model is tightly integrated with quantitative image analysis of different sized embryonic tissue explants spreading on extracellular matrix (ECM) and is regulated by a small set of parameters including forces on the free edge, tissue stiffness, strength of cell-ECM adhesions, and active cell shape changes. We find statistically significant trends in key parameters that vary with initial size of the explant, e.g., for larger explants cell-ECM adhesion forces are weaker and free edge forces are stronger. Furthermore, we demonstrate that estimated parameters for one explant can be used to predict the behavior of other similarly sized explants. These predictive methods can be used to guide further experiments to better understand how collective cell migration is regulated during development.

Indexed as

Computer SimulationImage Processing, Computer-AssistedModels, BiologicalTime-Lapse ImagingAnimalsBayes TheoremEmbryo, NonmammalianNumerical Analysis, Computer-AssistedXenopus laevis

Identifiers

PMID31246967
PMCPMC6597152
OpenAlexW2953733834

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.