Evidence map›Paper›PMID 31244282›Full record

ArticleAsian Pacific journal of cancer prevention : APJCP2019

MicroRNA Isolation by Trizol-Based Method and Its Stability in Stored Serum and cDNA Derivatives.

Keson Trakunram, Nidanut Champoochana, Pichitpon Chaniad, Paramee Thongsuksai, Pritsana Raungrut

Abstract read
In one paragraph

Article in Asian Pacific journal of cancer prevention : APJCP, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Selection and Validation of Reference Genes inPlants (Basel, Switzerland) · 2024
    Article
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  16. Clinical characteristics of 225 patients with COVID-19 in a tertiary Hospital near Wuhan, China.Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology · 2020
    Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Keson TrakunramDepartment of Biomedical Sciences, Faculty of Medicine, Prince of Songkla University, Songkhla, Thailand. Email: rpritsan@medicine.psu.ac.th
Nidanut ChampoochanaDepartment of Biomedical Sciences, Faculty of Medicine, Prince of Songkla University, Songkhla, Thailand. Email: rpritsan@medicine.psu.ac.th
Pichitpon ChaniadDepartment of Biomedical Sciences, Faculty of Medicine, Prince of Songkla University, Songkhla, Thailand. Email: rpritsan@medicine.psu.ac.th
Paramee ThongsuksaiDepartment of Pathology, Faculty of Medicine, Prince of Songkla University, Songkhla, Thailand.
Pritsana RaungrutDepartment of Biomedical Sciences, Faculty of Medicine, Prince of Songkla University, Songkhla, Thailand. Email: rpritsan@medicine.psu.ac.th

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

MicroRNAs (miRNAs) are small, non-coding RNA molecules that regulate gene expression at the post-transcriptional level. Since aberrant expression of miRNAs has been proposed as usage for blood-based biomarkers, hence reliable techniques for miRNA isolation as well as stability of miRNAs in various stored conditions needs to be explored. This present study aimed to investigate the efficacy of the Trizol-based isolation technique and the stability of miRNAs in stored serum and cDNA derivatives. Total RNA, including miRNAs, was isolated from human serum and a comparison of the efficiency of the Trizol®LS reagent isolation method against the miRNeasy®mini kit was conducted. Expression of RNU6, miR-145, and miR-20a was determined by quantitative real-time polymerase chain reaction (qRT-PCR). We showed that Trizol®LS isolation yielded significantly lower RNA concentrations than that of the miRNeasy®mini kit by approximately 35%. Purity of the isolated RNAs by both methods was similar. RNU6, miR-145, and miR-20a degraded at room temperature, but all genes were stable at 4ºC, -20ºC and -80ºC for a 72-hrs period, in both serum and cDNA storage conditions. In the stored cDNA derivatives, we observed the stability of RNU6, miR-145, and miR-20a for 3 months at -20ºC, and all genes also resisted 4 repeated freeze-thaw cycles at -20ºC. In conclusion, the Trizol-based method is efficient as well as economical to use for quantification of circulating miRNAs. In addition, we proposed that the storage of miRNA-derived cDNAs may be an alternative choice to avoid the stability effect.

Indexed as

RNA StabilityAdultCirculating MicroRNADNA, ComplementaryGuanidinesHealthy VolunteersHumansMicroRNAsPhenolsReal-Time Polymerase Chain ReactionSpecimen HandlingCirculating MicroRNADNA, ComplementaryGuanidinesMicroRNAsPhenolstrizolcDNA derivativesmiRNASerumStabilityTrizol-based method

Identifiers

PMID31244282
PMCPMC7021594

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.