Evidence map›Paper›PMID 31243438›Full record

ArticleGenome biology and evolution2019

Complete Genomes of Symbiotic Cyanobacteria Clarify the Evolution of Vanadium-Nitrogenase.

Jessica M Nelson, Duncan A Hauser, José A Gudiño, Yessenia A Guadalupe, John C Meeks, Noris Salazar Allen, Juan Carlos Villarreal, Fay-Wei Li

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
6.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 58 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Assimilatory NFrontiers in microbiology · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Review
  18. Article
  19. Article
  20. Molybdenum threshold for ecosystem scale alternative vanadium nitrogenase activity in boreal forests.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Jessica M NelsonBoyce Thompson Institute, Ithaca, New York.
Duncan A HauserBoyce Thompson Institute, Ithaca, New York.
José A GudiñoSmithsonian Tropical Research Institute, Panama City, Panama.
Yessenia A GuadalupeSmithsonian Tropical Research Institute, Panama City, Panama.
John C MeeksDepartment of Microbiology and Molecular Genetics, University of California, Davis, California.
Noris Salazar AllenSmithsonian Tropical Research Institute, Panama City, Panama.
Juan Carlos VillarrealSmithsonian Tropical Research Institute, Panama City, Panama.
Fay-Wei LiBoyce Thompson Institute, Ithaca, New York.
Smithsonian Tropical Research Institute · PACornell University · USUniversity of California, Davis · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plant endosymbiosis with nitrogen-fixing cyanobacteria has independently evolved in diverse plant lineages, offering a unique window to study the evolution and genetics of plant-microbe interaction. However, very few complete genomes exist for plant cyanobionts, and therefore little is known about their genomic and functional diversity. Here, we present four complete genomes of cyanobacteria isolated from bryophytes. Nanopore long-read sequencing allowed us to obtain circular contigs for all the main chromosomes and most of the plasmids. We found that despite having a low 16S rRNA sequence divergence, the four isolates exhibit considerable genome reorganizations and variation in gene content. Furthermore, three of the four isolates possess genes encoding vanadium (V)-nitrogenase (vnf), which is uncommon among diazotrophs and has not been previously reported in plant cyanobionts. In two cases, the vnf genes were found on plasmids, implying possible plasmid-mediated horizontal gene transfers. Comparative genomic analysis of vnf-containing cyanobacteria further identified a conserved gene cluster. Many genes in this cluster have not been functionally characterized and would be promising candidates for future studies to elucidate V-nitrogenase function and regulation.

Indexed as

CyanobacteriaMultigene FamilyNitrogenasePhylogenyPlasmidsRNA, Ribosomal, 16SNitrogenaseRNA, Ribosomal, 16SBlasiahornwortsliverwortsnanoporeNostocphylogenomics

Identifiers

PMID31243438
PMCPMC6645180
OpenAlexW2955493951

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.