Evidence map›Paper›PMID 31243369›Full record

ArticleNature2019

Gene expression across mammalian organ development.

Margarida Cardoso-Moreira, Jean Halbert, Delphine Valloton, Britta Velten, Chunyan Chen, Yi Shao, Angélica Liechti, Kelly Ascenção, Coralie Rummel, Svetlana Ovchinnikova and 23 more

Open access · greenAbstract readComparative Study
In one paragraph

Article in Nature, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 520 papers.

0numbers the graph read from it
0cells of the map it votes in
520citing papers in PubMed
37.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

520 citing papers in PubMed, 918 citations in OpenAlex.

  1. A muscle-enriched mitochondrial protein regulates postnatal heart growth through mitonuclear ubiquinone-PPAR signaling.Proceedings of the National Academy of Sciences of the United States of America · 2026
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460 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

33 authors at 18 institutions in 8 countries.

Margarida Cardoso-MoreiraCenter for Molecular Biology of Heidelberg University (ZMBH), Heidelberg, Germany. m.moreira@zmbh.uni-heidelberg.de.
Jean HalbertCenter for Integrative Genomics, University of Lausanne, Lausanne, Switzerland.
Delphine VallotonCenter for Integrative Genomics, University of Lausanne, Lausanne, Switzerland.
Britta VeltenGenome Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
Chunyan ChenKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing, China.
Yi ShaoKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing, China.
Angélica LiechtiCenter for Integrative Genomics, University of Lausanne, Lausanne, Switzerland.
Kelly AscençãoCenter for Integrative Genomics, University of Lausanne, Lausanne, Switzerland.
Coralie RummelCenter for Integrative Genomics, University of Lausanne, Lausanne, Switzerland.
Svetlana OvchinnikovaCenter for Molecular Biology of Heidelberg University (ZMBH), Heidelberg, Germany.
Pavel V MazinCenter for Neurobiology and Brain Restoration, Skolkovo Institute of Science and Technology, Moscow, Russia.
Ioannis XenariosCenter for Integrative Genomics, University of Lausanne, Lausanne, Switzerland.
Keith HarshmanCenter for Integrative Genomics, University of Lausanne, Lausanne, Switzerland.
Matthew MortInstitute of Medical Genetics, Cardiff University, Cardiff, UK.
David N CooperInstitute of Medical Genetics, Cardiff University, Cardiff, UK.
Carmen SandiLaboratory of Behavioral Genetics, Brain Mind Institute, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland.
Michael J SoaresInstitute for Reproduction and Perinatal Research, Departments of Pathology and Laboratory Medicine and Pediatrics, University of Kansas Medical Center, Kansas City, MO, USA.
Paula G FerreiraDepartamento de Anatomia, Universidade do Porto, Porto, Portugal.
Sandra AfonsoCIBIO/InBIO, Centro de Investigacão em Biodiversidade e Recursos Genéticos, Universidade do Porto, Porto, Portugal.
Miguel CarneiroCIBIO/InBIO, Centro de Investigacão em Biodiversidade e Recursos Genéticos, Universidade do Porto, Porto, Portugal.
James M A TurnerSex Chromosome Biology Laboratory, The Francis Crick Institute, London, UK.
John L VandeBergSouth Texas Diabetes and Obesity Institute, School of Medicine, The University of Texas Rio Grande Valley, Brownsville, Harlingen and Edinburg, TX, USA.
Amir FallahshahroudiAVIAN Behavioural Genomics and Physiology Group, IFM Biology, Linköping University, Linköping, Sweden.
Per JensenAVIAN Behavioural Genomics and Physiology Group, IFM Biology, Linköping University, Linköping, Sweden.
Rüdiger BehrPlatform Degenerative Diseases, German Primate Center, Leibniz Institute for Primate Research (DPZ), Göttingen, Germany.
Steven LisgoHuman Developmental Biology Resource, Institute of Genetic Medicine, Newcastle University, Newcastle, UK.
Susan LindsayHuman Developmental Biology Resource, Institute of Genetic Medicine, Newcastle University, Newcastle, UK.
Philipp KhaitovichCenter for Neurobiology and Brain Restoration, Skolkovo Institute of Science and Technology, Moscow, Russia.
Wolfgang HuberGenome Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
Julie BakerDepartment of Genetics, Stanford University School of Medicine, Stanford, CA, USA.
Simon AndersCenter for Molecular Biology of Heidelberg University (ZMBH), Heidelberg, Germany.
Yong E ZhangKey Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing, China.
Henrik KaessmannCenter for Molecular Biology of Heidelberg University (ZMBH), Heidelberg, Germany. h.kaessmann@zmbh.uni-heidelberg.de.
University of Lausanne · CHHeidelberg University · DEUniversidade do Porto · PTCardiff University · GBEuropean Molecular Biology Laboratory · DELinköping University · SENewcastle University · GBChinese Academy of Sciences · CNÉcole Polytechnique Fédérale de Lausanne · CHGerman Centre for Cardiovascular Research · DEInstitute of Zoology · CNShanghai Institute of Nutrition and Health · CNSkolkovo Institute of Science and Technology · RUStanford University · USThe Francis Crick Institute · GBThe University of Texas Rio Grande Valley · USUniversity of Chinese Academy of Sciences · CNUniversity of Kansas Medical Center · US

Funding

TROPHOBLAST DIFFERENTIATIONR01HD020676 · NICHD · UNIVERSITY OF KANSAS MEDICAL CENTER · PI MICHAEL J SOARES · 1986 to 2026
$10.1M
Stem Cells and Epigenetics of Trophoblast Lineage DevelopmentP01HD079363 · NICHD · UNIVERSITY OF KANSAS MEDICAL CENTER · PI WOLFE, MICHAEL W · 2014 to 2018
$5.7M
Environmental Exposures, AHR Activation, and Placental Origins of DevelopmentR01ES029280 · NIEHS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI GRUNDBERG, ELIN, SOARES, MICHAEL J · 2018 to 2022
$2.6M
Anti-Coagulation Factors and PlacentationR01HD099638 · NICHD · UNIVERSITY OF KANSAS MEDICAL CENTER · PI SOARES, MICHAEL J · 2019 to 2023
$2.5M
Medical Research Council MR/R006237/1NICHD NIH HHS P01 HD079363NICHD NIH HHS R01 HD020676NICHD NIH HHS R01 HD099638NIEHS NIH HHS R01 ES029280Swiss National Science Foundation 146474Wellcome Trust
6 · The paper itself

Abstract

The evolution of gene expression in mammalian organ development remains largely uncharacterized. Here we report the transcriptomes of seven organs (cerebrum, cerebellum, heart, kidney, liver, ovary and testis) across developmental time points from early organogenesis to adulthood for human, rhesus macaque, mouse, rat, rabbit, opossum and chicken. Comparisons of gene expression patterns identified correspondences of developmental stages across species, and differences in the timing of key events during the development of the gonads. We found that the breadth of gene expression and the extent of purifying selection gradually decrease during development, whereas the amount of positive selection and expression of new genes increase. We identified differences in the temporal trajectories of expression of individual genes across species, with brain tissues showing the smallest percentage of trajectory changes, and the liver and testis showing the largest. Our work provides a resource of developmental transcriptomes of seven organs across seven species, and comparative analyses that characterize the development and evolution of mammalian organs.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsBiological EvolutionChickensFemaleHumansMacaca mulattaMaleMiceOpossumsOrganogenesisRabbitsRatsTranscriptome

Identifiers

PMID31243369
PMCPMC6658352
OpenAlexW2954492537

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.