Evidence map›Paper›PMID 31243330›Full record

ArticleThe ISME journal2019

A Randomized Trait Community Clustering approach to unveil consistent environmental thresholds in community assembly.

Xavier Triadó-Margarit, José A Capitán, Mateu Menéndez-Serra, Rüdiger Ortiz-Álvarez, Vicente J Ontiveros, Emilio O Casamayor, David Alonso

Abstract read
In one paragraph

Article in The ISME journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Review
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  6. Review
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  9. Towards sustainable agriculture: rhizosphere microbiome engineering.Applied microbiology and biotechnology · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Xavier Triadó-MargaritIntegrative Freshwater Ecology Group Centre for Advanced Studies of Blanes (CEAB-CSIC), Spanish Council for Scientific Research, Accés Cala St. Francesc 14, E-17300, Blanes, Spain.ORCID http://orcid.org/0000-0001-5339-3221
José A CapitánDepartamento de Matemática Aplicada, Universidad Politécnica de Madrid, Av. Juan de Herrera, 6, E-28040, Madrid, Spain.ORCID http://orcid.org/0000-0002-6245-0088
Mateu Menéndez-SerraIntegrative Freshwater Ecology Group Centre for Advanced Studies of Blanes (CEAB-CSIC), Spanish Council for Scientific Research, Accés Cala St. Francesc 14, E-17300, Blanes, Spain.ORCID http://orcid.org/0000-0003-0680-5304
Rüdiger Ortiz-ÁlvarezIntegrative Freshwater Ecology Group Centre for Advanced Studies of Blanes (CEAB-CSIC), Spanish Council for Scientific Research, Accés Cala St. Francesc 14, E-17300, Blanes, Spain.ORCID http://orcid.org/0000-0002-8553-5420
Vicente J OntiverosTheoretical and Computational Ecology, Centre for Advanced Studies of Blanes (CEAB-CSIC), Spanish Council for Scientific Research, Accés Cala St. Francesc 14, E-17300, Blanes, Spain.ORCID http://orcid.org/0000-0001-8477-2574
Emilio O CasamayorIntegrative Freshwater Ecology Group Centre for Advanced Studies of Blanes (CEAB-CSIC), Spanish Council for Scientific Research, Accés Cala St. Francesc 14, E-17300, Blanes, Spain. casamayor@ceab.csic.es.ORCID http://orcid.org/0000-0001-7074-3318
David AlonsoTheoretical and Computational Ecology, Centre for Advanced Studies of Blanes (CEAB-CSIC), Spanish Council for Scientific Research, Accés Cala St. Francesc 14, E-17300, Blanes, Spain. dalonso@ceab.csic.es.ORCID http://orcid.org/0000-0002-8888-1644

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Similarities and differences of phenotypes within local co-occurring species hold the key to inferring the contribution of stochastic or deterministic processes in community assembly. Developing both phylogenetic-based and trait-based quantitative methods to unravel these processes is a major aim in community ecology. We developed a trait-based approach that: (i) assesses if a community trait clustering pattern is related to increasing environmental constraints along a gradient; and (ii) determines quantitative thresholds for an environmental variable along a gradient to interpret changes in prevailing community assembly drivers. We used a regional set of natural shallow saline ponds covering a wide salinity gradient (0.1-40% w/v). We identify a consistent discrete salinity threshold (ca. 5%) for microbial community assembly drivers. Above 5% salinity a strong environmental filtering prevailed as an assembly force, whereas a combination of biotic and abiotic factors dominated at lower salinities. This method provides a conceptual approach to identify consistent environmental thresholds in community assembly and enables quantitative predictions for the ecological impact of environmental changes.

Indexed as

BiotaCluster AnalysisMicrobiotaModels, BiologicalPhenotypePhylogenyRNA, BacterialRNA, Ribosomal, 16SSalinityRNA, BacterialRNA, Ribosomal, 16S

Identifiers

PMID31243330
PMCPMC6794281

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.