Evidence map›Paper›PMID 31243155›Full record

ArticleScience translational medicine2019

Pediatric patients with acute lymphoblastic leukemia generate abundant and functional neoantigen-specific CD8

Anthony E Zamora, Jeremy Chase Crawford, E Kaitlynn Allen, Xi-Zhi J Guo, Jesse Bakke, Robert A Carter, Hossam A Abdelsamed, Ardiana Moustaki, Yongjin Li, Ti-Cheng Chang and 10 more

Open access · greenAbstract read
In one paragraph

Article in Science translational medicine, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 89 citations in OpenAlex.

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  11. [Research progress of tumor-infiltrating lymphocytes in malignant hematological diseases].Zhonghua xue ye xue za zhi = Zhonghua xueyexue zazhi · 2024
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

20 authors at 1 institution in 1 country.

Anthony E ZamoraDepartment of Immunology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.ORCID 0000-0001-5712-5339
Jeremy Chase CrawfordDepartment of Immunology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.ORCID 0000-0003-4096-6048
E Kaitlynn AllenDepartment of Immunology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.ORCID 0000-0002-3067-751X
Xi-Zhi J GuoDepartment of Immunology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.ORCID 0000-0002-5564-3287
Jesse BakkeDepartment of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.ORCID 0000-0003-0305-5165
Robert A CarterDepartment of Computational Biology and Bioinformatics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.
Hossam A AbdelsamedDepartment of Immunology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.
Ardiana MoustakiDepartment of Immunology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.
Yongjin LiDepartment of Computational Biology and Bioinformatics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.
Ti-Cheng ChangDepartment of Computational Biology and Bioinformatics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.ORCID 0000-0001-5302-9147
Walid AwadDepartment of Immunology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.
Mari H DallasDepartment of Bone Marrow Transplantation and Cellular Therapy, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.ORCID 0000-0001-6521-7065
Charles G MullighanDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.ORCID 0000-0002-1871-1850
James R DowningDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.
Terrence L GeigerDepartment of Pathology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.ORCID 0000-0001-8290-5732
Taosheng ChenDepartment of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.
Douglas R GreenDepartment of Immunology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.
Benjamin A YoungbloodDepartment of Immunology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.
Jinghui ZhangDepartment of Computational Biology and Bioinformatics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.ORCID 0000-0003-3350-9682
Paul G ThomasDepartment of Immunology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA. paul.thomas@stjude.org.ORCID 0000-0001-7955-0256
St. Jude Children's Research Hospital · US

Funding

The DNA Damage Response and Tumorigenesis in the BrainP01CA096832 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI BAKER, SUZANNE J. · 2003 to 2025
$38.0M
CPML - Project 3: Genome-wide Studies of Adverse EffectsP50GM115279 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI LOH, MIGNON LEE-CHEUN, RELLING, MARY V · 2015 to 2019
$15.1M
Translating genomic discoveries to improved outcomes for high risk acute leukemiaR35CA197695 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI Charles G Mullighan · 2017 to 2026
$11.4M
DECODING THE INTERACTIONS BETWEEN T CELL RECEPTORS AND PEPTIDE-MHCR01AI136514 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI Paul G. Thomas · 2018 to 2026
$6.9M
Regulation of xenobiotic receptors PXR and CAR: implications in drug dispositionR35GM118041 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI Taosheng Chen · 2016 to 2026
$4.3M
Mechanisms to diversify repertoire and modify T cell activity after infectionR01AI107625 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI THOMAS, PAUL G. · 2013 to 2017
$2.3M
Establishment, maintenance, and consequences of asymmetric cell division in T cellsR01AI123322 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI GREEN, DOUGLAS R. · 2017 to 2021
$2.2M
Epigenetic Regulation of T-cell Exhaustion During Treated Chronic HIV InfectionR01AI114442 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI YOUNGBLOOD, BENJAMIN ALAN · 2015 to 2019
$2.1M
NCI NIH HHS P01 CA096832NCI NIH HHS R35 CA197695NIAID NIH HHS R01 AI107625NIAID NIH HHS R01 AI114442NIAID NIH HHS R01 AI123322NIAID NIH HHS R01 AI136514NIGMS NIH HHS P50 GM115279NIGMS NIH HHS R35 GM118041
6 · The paper itself

Abstract

Cancer arises from the accumulation of genetic alterations, which can lead to the production of mutant proteins not expressed by normal cells. These mutant proteins can be processed and presented on the cell surface by major histocompatibility complex molecules as neoepitopes, allowing CD8

Indexed as

Antigen PresentationAntigens, NeoplasmCD8-Positive T-LymphocytesChildGenetic HeterogeneityHumansImmunodominant EpitopesPrecursor Cell Lymphoblastic Leukemia-LymphomaReproducibility of ResultsTranscription, GeneticAntigens, NeoplasmImmunodominant Epitopes

Identifiers

PMID31243155
PMCPMC7020562
OpenAlexW2955292795

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.