Evidence map›Paper›PMID 31243128›Full record

ArticleJournal of virology2019

A Zoonotic Adenoviral Human Pathogen Emerged through Genomic Recombination among Human and Nonhuman Simian Hosts.

Shoaleh Dehghan, Jason Seto, Elizabeth B Liu, Ashrafali M Ismail, Ramana Madupu, Albert Heim, Morris S Jones, David W Dyer, James Chodosh, Donald Seto

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 1 pooled it
4.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 1 synthesis or guideline pooled it, 40 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Genome Analyses of Ten New Ape Adenoviruses with Similarity to HumanInternational journal of molecular sciences · 2022
    Article
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  11. Article
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  19. Article
  20. Non-Human Primate-Derived Adenoviruses for Future Use as Oncolytic Agents?International journal of molecular sciences · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 2 countries.

Shoaleh DehghanChemistry Department, American University, Washington, DC, USA.
Jason SetoBioinformatics and Computational Biology Program, School of Systems Biology, George Mason University, Manassas, Virginia, USA.
Elizabeth B LiuBioinformatics and Computational Biology Program, School of Systems Biology, George Mason University, Manassas, Virginia, USA.
Ashrafali M IsmailDepartment of Ophthalmology, Howe Laboratory, Massachusetts Eye and Ear, Harvard Medical School, Boston, Massachusetts, USA.ORCID 0000-0001-8694-7235
Ramana MadupuJ. Craig Venter Institute, Rockville, Maryland, USA.
Albert HeimInstitut für Virologie, Medizinische Hochschule, Hannover, Germany.ORCID 0000-0002-9447-1561
Morris S JonesDivision of Infectious Diseases, Naval Medical Center, San Diego, California, USA.
David W DyerDepartment of Microbiology and Immunology, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma, USA.
James ChodoshDepartment of Ophthalmology, Howe Laboratory, Massachusetts Eye and Ear, Harvard Medical School, Boston, Massachusetts, USA james_chodosh@meei.harvard.edu dseto@gmu.edu.ORCID 0000-0002-7463-1599
Donald SetoBioinformatics and Computational Biology Program, School of Systems Biology, George Mason University, Manassas, Virginia, USA james_chodosh@meei.harvard.edu dseto@gmu.edu.
George Mason University · USMassachusetts Eye and Ear Infirmary · USJ. Craig Venter Institute · USMedizinische Hochschule Hannover · DENaval Medical Center San Diego · USUniversity of Oklahoma Health Sciences Center · US

Funding

Proteomics CoreP20GM103447 · NIGMS · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI David W Dyer · 2012 to 2026
$60.2M
P30 Core Grant for Vision ResearchP30EY014104 · NEI · MASSACHUSETTS EYE AND EAR INFIRMARY · PI Janey L Wiggs · 2002 to 2026
$15.1M
Immunopathogenesis of Adenovirus KeratitisR01EY013124 · NEI · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI James Chodosh, Jaya Rajaiya · 2001 to 2026
$10.8M
NEI NIH HHS P30 EY014104NEI NIH HHS R01 EY013124NIAID NIH HHS HHSN272200900007CNIGMS NIH HHS P20 GM103447
6 · The paper itself

Abstract

Genomics analysis of a historically intriguing and predicted emergent human adenovirus (HAdV) pathogen, which caused pneumonia and death, provides insight into a novel molecular evolution pathway involving "ping-pong" zoonosis and anthroponosis. The genome of this promiscuous pathogen is embedded with evidence of unprecedented multiple, multidirectional, stable, and reciprocal cross-species infections of hosts from three species (human, chimpanzee, and bonobo). This recombinant genome, typed as HAdV-B76, is identical to two recently reported simian AdV (SAdV) genomes isolated from chimpanzees and bonobos. Additionally, the presence of a critical adenoviral replication element found in HAdV genomes, in addition to genes that are highly similar to counterparts in other HAdVs, reinforces its potential as a human pathogen. Reservoirs in nonhuman hosts may explain periods of apparent absence and then reemergence of human adenoviral pathogens, as well as present pathways for the genesis of those thought to be newly emergent. The nature of the HAdV-D76 genome has implications for the use of SAdVs as gene delivery vectors in human gene therapy and vaccines, selected to avoid preexisting and potentially fatal host immune responses to HAdV.

Indexed as

Adenoviruses, HumanAdenoviruses, SimianAdenovirus Infections, HumanAnimalsComputational BiologyDNA, ViralEvolution, MolecularGenome, ViralGenomicsHumansPan paniscusPan troglodytesPhylogenyRecombination, GeneticZoonosesDNA, Viraladenovirusanthroponosisemerging pathogengenomicshomologous recombinationvirus evolutionzoonosis

Identifiers

PMID31243128
PMCPMC6714811
OpenAlexW2955300354

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.