Evidence map›Paper›PMID 31243119›Full record

ArticleJournal of lipid research2019

Probing compartment-specific sphingolipids with targeted bacterial sphingomyelinases and ceramidases.

Wataru Sakamoto, Daniel Canals, Silvia Salamone, Janet Allopenna, Christopher J Clarke, Justin Snider, Lina M Obeid, Yusuf A Hannun

Open access · hybridAbstract read
In one paragraph

Article in Journal of lipid research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Review
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  5. Review
  6. Animals : an open access journal from MDPI · 2022
    Article
  7. CaNature communications · 2022
    Article
  8. Review
  9. Review
  10. The doxorubicin-induced cell motility network is under the control of the ceramide-activated protein phosphatase 1 alpha.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2021
    Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Wataru SakamotoDepartment of Medicine and Stony Brook Cancer Center, Stony Brook University, Stony Brook, NY.
Daniel CanalsDepartment of Medicine and Stony Brook Cancer Center, Stony Brook University, Stony Brook, NY.ORCID 0000-0002-9293-5123
Silvia SalamoneDepartment of Medicine and Stony Brook Cancer Center, Stony Brook University, Stony Brook, NY.
Janet AllopennaDepartment of Medicine and Stony Brook Cancer Center, Stony Brook University, Stony Brook, NY.
Christopher J ClarkeDepartment of Medicine and Stony Brook Cancer Center, Stony Brook University, Stony Brook, NY.
Justin SniderDepartment of Medicine and Stony Brook Cancer Center, Stony Brook University, Stony Brook, NY.
Lina M ObeidDepartment of Medicine and Stony Brook Cancer Center, Stony Brook University, Stony Brook, NY.ORCID 0000-0002-0734-0847
Yusuf A HannunDepartment of Medicine and Stony Brook Cancer Center, Stony Brook University, Stony Brook, NY Yusuf.Hannun@stonybrookmedicine.edu.ORCID 0000-0003-3349-3369
Stony Brook University · USNorthport VA Medical Center · USOno Pharmaceutical (Japan) · JPStony Brook Medicine · US

Funding

Sphingolipids in Cancer Therapy and AngiogenesisP01CA097132 · NCI · STATE UNIVERSITY NEW YORK STONY BROOK · PI YUSUF AWNI HANNUN · 2003 to 2026
$30.8M
Neutral Sphingomyelinases and Bioactive CeramidesR35GM118128 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI HANNUN, YUSUF AWNI · 2016 to 2025
$7.9M
Role and Regulation of Ceramide Synthases in ApoptosisR01GM097741 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI LUBERTO, CHIARA · 2011 to 2019
$3.5M
Ceramide Activated Protein PhosphatasesR01CA218678 · NCI · STATE UNIVERSITY NEW YORK STONY BROOK · PI YUSUF AWNI HANNUN · 2018 to 2026
$3.4M
NCI NIH HHS P01 CA097132NCI NIH HHS R01 CA218678NIGMS NIH HHS R01 GM097741NIGMS NIH HHS R35 GM118128
6 · The paper itself

Abstract

Sphingolipids contribute to the regulation of cell and tissue homeostasis, and disorders of sphingolipid metabolism lead to diseases such as inflammation, stroke, diabetes, and cancer. Sphingolipid metabolic pathways involve an array of enzymes that reside in specific subcellular organelles, resulting in the formation of many diverse sphingolipids with distinct molecular species based on the diversity of the ceramide (Cer) structure. In order to probe compartment-specific metabolism of sphingolipids in this study, we analyzed the Cer and SM species preferentially produced in the inner plasma membrane (PM), Golgi apparatus, ER, mitochondria, nucleus, and cytoplasm by using compartmentally targeted bacterial SMases and ceramidases. The results showed that the length of the acyl chain of Cer becomes longer according to the progress of Cer from synthesis in the ER to the Golgi apparatus, then to the PM. These findings suggest that each organelle shows different properties of SM-derived Cers consistent with its emerging distinct functions in vitro and in vivo.

Indexed as

Cell LineCeramidasesCeramidesEndoplasmic ReticulumGolgi ApparatusHumansSphingolipidsSphingomyelin PhosphodiesteraseCeramidasesCeramidesSphingolipidsSphingomyelin Phosphodiesterasecellular organellesceramide molecular speciesmass spectrometrysphingomyelinsphingosine

Identifiers

PMID31243119
PMCPMC6824496
OpenAlexW2955842120

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.