Evidence map›Paper›PMID 31242861›Full record

ArticleBMC medical genetics2019

DOCK8 mutation diagnosed using whole-exome sequencing of the dried blood spot-derived DNA: a case report of an Iraqi girl diagnosed in Japan.

Lika'a Fasih Y Al-Kzayer, Hanadi Munaf H Al-Aradi, Tomonari Shigemura, Kenji Sano, Miyuki Tanaka, Motoharu Hamada, Kenan Hussien Ali, Osamah Mohammed Aldaghir, Yozo Nakazawa, Yusuke Okuno

Open access · goldAbstract readCase Reports
In one paragraph

Article in BMC medical genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
0.3field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 2 countries.

Lika'a Fasih Y Al-KzayerDepartment of Pediatrics, Shinshu University School of Medicine, Matsumoto, Nagano, Japan.
Hanadi Munaf H Al-AradiDepartment of Pediatrics, Al-Hussein Teaching Hospital, Samawah, Muthanna, Iraq.
Tomonari ShigemuraDepartment of Pediatrics, Shinshu University School of Medicine, Matsumoto, Nagano, Japan.
Kenji SanoDepartment of Pathology, Iida Municipal Hospital, Iida, Nagano, Japan.
Miyuki TanakaDepartment of Pediatrics, Shinshu University School of Medicine, Matsumoto, Nagano, Japan.
Motoharu HamadaDepartment of Pediatrics, Nagoya University Graduate School of Medicine, Nagoya, Japan.
Kenan Hussien AliDepartment of Family Medicine, Baghdad University, College of Medicine, Baghdad, Iraq.
Osamah Mohammed AldaghirDepartment of Oral and Maxillofacial Surgery, College of Dentistry, Al-Muthanna University, Samawah, Muthanna, Iraq.
Yozo NakazawaDepartment of Pediatrics, Shinshu University School of Medicine, Matsumoto, Nagano, Japan.
Yusuke OkunoCenter for Advanced Medicine and Clinical Research, Nagoya University Hospital, 65 Tsurumai-cho, Showa-ku, Nagoya, 466-8560, Japan. yusukeo@med.nagoya-u.ac.jp.ORCID 0000-0003-3139-9272
Shinshu University · JPAl-Muthanna University · IQNagano Municipal Hospital · JPNagoya University · JPNagoya University Hospital · JPUniversity of Baghdad · IQ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundDedicator of cytokinesis 8 (DOCK8) deficiency (MIM #243700) is a rare disease, leads to a combined primary immunodeficiency (PID), and accounts for the autosomal recessive-hyper immunoglobulin E syndrome (AR-HIES). DOCK8 deficiency status characterizes by recurrent infections, atopy, and risk of cancer. Lymphoproliferative disease complicating PID, is difficult to diagnose. Our aim is to present a rare case of PID, and to the best of our knowledge, she is the first case of DOCK8 deficiency from Iraq. The genetic diagnosis was carried out in Japan using dried blood spot-based DNA transfer and whole-exome sequencing. CASE PRESENTATION: An 11-year-old Iraqi girl, of double first-cousin-parents, had a history of severe eczema, food allergy, and repeated infections. She presented with a jaw mass, bilateral cervical and axillary lymphadenopathy, and immunoglobulin (Ig) assays of 20, 3.3 and 1.7-fold above maximum normal level for age of IgE, IgA and IgG, respectively, along with a low IgM, eosinophilia and lymphopenia. Based on the jaw mass biopsy, non-Hodgkin lymphoma was suggested in Iraq, whereas histopathological re-evaluation in Japan revealed the diagnosis of a polyclonal reactive proliferation spectrum of lymphoproliferative disorders/plasmacytic hyperplasia, complicating PID. Whole-exome sequencing supported the diagnosis of PID by identifying a homozygous DOCK8 mutation with previously reported pathogenicity (NM_203447:c.3332delT, p.Phe1113Leufs*2), that may be attributed to consanguinity.

conclusionsInternational collaboration using an effective DNA transportation technique and next-generation sequencing was the key to pinpoint the diagnosis of DOCK8 deficiency. Our case asserted that careful pathogenetic evaluation, in an advanced setting, was crucial for ruling out the neoplastic process. Pediatricians in areas with a high prevalence of consanguinity marriage should have a high index of suspicion of DOCK8 deficiency in patients with recalcitrant eczema, and frequent respiratory and skin infectious episodes.

Indexed as

Genetic Association StudiesGenetic Predisposition to DiseaseMutationAntibodiesChildConsanguinityDNAEosinophiliaExome SequencingFemaleGuanine Nucleotide Exchange FactorsHomozygoteHumansIraqJapanJawAntibodiesDNADOCK8 protein, humanGuanine Nucleotide Exchange FactorsConsanguineous marriagesDOCK8 deficiencyDried blood spotsFlinders technology associates (FTA) cardsHyper immunoglobulin E syndrome (HIES)IraqLymphoproliferative disease (LPD)Primary immune deficiency (PID)Whole exome sequencing (WES)

Identifiers

PMID31242861
PMCPMC6595679
OpenAlexW2953841367

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.