Evidence map›Paper›PMID 31242772›Full record

ArticleFASEB journal : official publication of the Federation of American Societies for Experimental Biology2019

Down-regulation of ATF1 leads to early neuroectoderm differentiation of human embryonic stem cells by increasing the expression level of SOX2.

Shang-Chih Yang, Jan-Jan Liu, Cheng-Kai Wang, Yu-Tsen Lin, Su-Yi Tsai, Wei-Ju Chen, Wei-Kai Huang, Po-Wen A Tu, Yu-Chen Lin, Ching-Fang Chang and 12 more

Open access · bronzeAbstract read
In one paragraph

Article in FASEB journal : official publication of the Federation of American Societies for Experimental Biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
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  6. EditingInternational journal of molecular sciences · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 7 institutions in 1 country.

Shang-Chih YangInstitute of Biochemistry and Molecular Biology, National Yang-Ming University, Taipei, Taiwan.
Jan-Jan Liu *Genomics Research Center, Academia Sinica, Taipei, Taiwan.
Cheng-Kai Wang *Institute of Biochemistry and Molecular Biology, National Yang-Ming University, Taipei, Taiwan.
Yu-Tsen Lin *Genomics Research Center, Academia Sinica, Taipei, Taiwan.
Su-Yi TsaiDepartment of Life Science, National Taiwan University, Taipei, Taiwan.
Wei-Ju ChenGenomics Research Center, Academia Sinica, Taipei, Taiwan.
Wei-Kai HuangGenomics Research Center, Academia Sinica, Taipei, Taiwan.
Po-Wen A TuDepartment of Pediatrics, National Taiwan University Hospital, College of Medicine, National Taiwan University, Taipei, Taiwan.
Yu-Chen LinDepartment of Life Science, National Taiwan University, Taipei, Taiwan.
Ching-Fang ChangGenomics Research Center, Academia Sinica, Taipei, Taiwan.
Chih-Lun ChengGenomics Research Center, Academia Sinica, Taipei, Taiwan.
Hsuan LinGenomics Research Center, Academia Sinica, Taipei, Taiwan.
Chien-Ying LaiGenomics Research Center, Academia Sinica, Taipei, Taiwan.
Chun-Yu LinGenomics Research Center, Academia Sinica, Taipei, Taiwan.
Yi-Hsuan LeeGenomics Research Center, Academia Sinica, Taipei, Taiwan.
Yen-Chun ChiuGenomics Research Center, Academia Sinica, Taipei, Taiwan.
Chiao-Ching HsuGenomics Research Center, Academia Sinica, Taipei, Taiwan.
Shu-Ching HsuNational Institute of Infectious Diseases and Vaccinology, Zhunan, Taiwan.
Michael HsiaoGenomics Research Center, Academia Sinica, Taipei, Taiwan.
Scott C SchuylerDepartment of Biomedical Sciences, College of Medicine, Chang Gung University, Taoyuan City, Taiwan.
Frank Leigh LuDepartment of Pediatrics, National Taiwan University Hospital, College of Medicine, National Taiwan University, Taipei, Taiwan.
Jean LuInstitute of Biochemistry and Molecular Biology, National Yang-Ming University, Taipei, Taiwan.
Genomics Research Center, Academia Sinica · TWNational Taiwan University Hospital · TWChang Gung University · TWInstitute of Molecular Biology, Academia Sinica · TWNational Health Research Institutes · TWNational Yang Ming Chiao Tung University · TWTzu Chi University · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We reveal by high-throughput screening that activating transcription factor 1 (ATF1) is a novel pluripotent regulator in human embryonic stem cells (hESCs). The knockdown of ATF1 expression significantly up-regulated neuroectoderm (NE) genes but not mesoderm, endoderm, and trophectoderm genes. Of note, down-regulation or knockout of ATF1 with short hairpin RNA (shRNA), small interfering RNA (siRNA), or clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated protein 9 (Cas9) was sufficient to up-regulate sex-determining region Y-box (SOX)2 and paired box 6 (PAX6) expression under the undifferentiated or differentiated conditions, whereas overexpression of ATF1 suppressed NE differentiation. Endogenous ATF1 was spontaneously down-regulated after d 1-3 of neural induction. By double-knockdown experiments, up-regulation of SOX2 was critical for the increase of PAX6 and SOX1 expression in shRNA targeting

Indexed as

Cell DifferentiationGene Expression Regulation, DevelopmentalActivating Transcription Factor 1Cells, CulturedDown-RegulationEndodermHuman Embryonic Stem CellsHumansMesodermNeuronsRNA, Small InterferingSOXB1 Transcription FactorsActivating Transcription Factor 1ATF1 protein, humanRNA, Small InterferingSOX2 protein, humanSOXB1 Transcription Factorsearly developmentgatekeeperhigh-throughput screen

Identifiers

PMID31242772
PMCPMC6704446
OpenAlexW2955404886

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.