ArticleGigaScience2019
The genome assembly and annotation of yellowhorn (Xanthoceras sorbifolium Bunge).
Article in GigaScience, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.
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33 citing papers in PubMed.
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- Genome-wide association analysis and gene mining of flavonoids in Xanthoceras sorbifolia.Scientific reports · 2025Article
- Additions to Pleosporalean Taxa Associated withMicroorganisms · 2025Article
- Two haplotype-resolved telomere-to-telomere genome assemblies of Xanthoceras sorbifolium.Scientific data · 2025Article
- High-resolution genome assembly and population genetic study of the endangered mapleHorticulture research · 2025Article
- Unraveling the Ancient Introgression History ofInternational journal of molecular sciences · 2025Article
- Pan-genome analyses of 11 Fraxinus species provide insights into salt adaptation in ash trees.Plant communications · 2025Article
- Genome-wide characterization of FAD gene family in Xanthoceras sorbifolium Bunge and germplasm assessment.PloS one · 2025Article
- Chromosome-level Haploid Assembly of Cannabis sativa L. cv. Pink Pepper.Scientific data · 2024Article
- Compare Analysis of Codon Usage Bias of Nuclear Genome in Eight Sapindaceae Species.International journal of molecular sciences · 2024Article
- Genome-Wide Characterization and Development of Simple Sequence Repeat Markers for Molecular Diversity Analyses in Yellowhorn (Plants (Basel, Switzerland) · 2024Article
- Agronomic, physiological and transcriptional characteristics provide insights into fatty acid biosynthesis in yellowhorn (Frontiers in genetics · 2024Article
- Genome-wide association analysis identifies a candidate gene controlling seed size and yield inHorticulture research · 2024Article
- From comparative gene content and gene order to ancestral contigs, chromosomes and karyotypes.Scientific reports · 2023Article
- The core triacylglycerol toolbox in woody oil plants reveals targets for oil production bioengineering.Frontiers in plant science · 2023Article
- High-quality genome assembly and comparative genomic profiling of yellowhorn (Frontiers in plant science · 2023Article
- Genomic analyses provide insights into the evolution and salinity adaptation of halophyte Tamarix chinensis.GigaScience · 2022Article
- The Current Developments in Medicinal Plant Genomics Enabled the Diversification of Secondary Metabolites' Biosynthesis.International journal of molecular sciences · 2022Review
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14 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundYellowhorn (Xanthoceras sorbifolium Bunge), a deciduous shrub or small tree native to north China, is of great economic value. Seeds of yellowhorn are rich in oil containing unsaturated long-chain fatty acids that have been used for producing edible oil and nervonic acid capsules. However, the lack of a high-quality genome sequence hampers the understanding of its evolution and gene functions.
findingsIn this study, a whole genome of yellowhorn was sequenced and assembled by integration of Illumina sequencing, Pacific Biosciences single-molecule real-time sequencing, 10X Genomics linked reads, Bionano optical maps, and Hi-C. The yellowhorn genome assembly was 439.97 Mb, which comprised 15 pseudo-chromosomes covering 95.42% (419.84 Mb) of the assembled genome. The repetitive fractions accounted for 56.39% of the yellowhorn genome. The genome contained 21,059 protein-coding genes. Of them, 18,503 (87.86%) genes were found to be functionally annotated with ≥1 "annotation" term by searching against other databases. Transcriptomic analysis showed that 341, 135, 125, 113, and 100 genes were specifically expressed in hermaphrodite flower, staminate flower, young fruit, leaf, and shoot, respectively. Phylogenetic analysis suggested that yellowhorn and Dimocarpus longan diverged from their most recent common ancestor ∼46 million years ago.
conclusionsThe availability and subsequent annotation of the yellowhorn genome, as well as the identification of tissue-specific functional genes, provides a valuable reference for plant comparative genomics, evolutionary studies, and molecular design breeding.
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