ArticleGigaScience2019
Pseudomolecule-level assembly of the Chinese oil tree yellowhorn (Xanthoceras sorbifolium) genome.
Article in GigaScience, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.
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Who cites it
27 citing papers in PubMed, 81 citations in OpenAlex.
- Dynamic metabolic and transcriptomic profiling reveal regulation of auxin signal transduction in Xanthoceras sorbifolium bunge pistil development.BMC plant biology · 2026Article
- Two haplotype-resolved telomere-to-telomere genome assemblies of Xanthoceras sorbifolium.Scientific data · 2025Article
- The overall regulatory network and contributions of ABC(D)E model genes in yellowhorn flower development.BMC plant biology · 2024Article
- Genome-wide association analysis identifies a candidate gene controlling seed size and yield inHorticulture research · 2024Article
- Agronomic, physiological and transcriptional characteristics provide insights into fatty acid biosynthesis in yellowhorn (Frontiers in genetics · 2024Article
- Effects of drought stress on photosynthetic physiological characteristics, leaf microstructure, and related gene expression of yellow horn.Plant signaling & behavior · 2023Article
- Identification of Functional Brassinosteroid Receptor Genes in Oaks and Functional Analysis ofInternational journal of molecular sciences · 2023Article
- Characterization of the horse chestnut genome reveals the evolution of aescin and aesculin biosynthesis.Nature communications · 2023Article
- The double flower variant of yellowhorn is due to a LINE1 transposon-mediated insertion.Plant physiology · 2023Article
- High-quality genome assembly and comparative genomic profiling of yellowhorn (Frontiers in plant science · 2023Article
- The core triacylglycerol toolbox in woody oil plants reveals targets for oil production bioengineering.Frontiers in plant science · 2023Article
- Genome-wide analysis of the heat shock transcription factor family reveals saline-alkali stress responses inPeerJ · 2023Article
- Identification and characterization of lipoxygenase (LOX) genes involved in abiotic stresses in yellow horn.PloS one · 2023Article
- Differentiated responses of the phyllosphere bacterial community of the yellowhorn tree to precipitation and temperature regimes across Northern China.Frontiers in plant science · 2023Article
- Identification and Characterization of AP2/ERF Transcription Factors in Yellow Horn.International journal of molecular sciences · 2022Article
- Genome sequencing and comparative analysis ofiScience · 2022Article
- Genomic and transcriptomic analyses provide insights into valuable fatty acid biosynthesis and environmental adaptation of yellowhorn.Frontiers in plant science · 2022Article
- A naturally-occurring phenomenon of flower color change during flower development inFrontiers in plant science · 2022Article
- Small RNA profiling for identification of microRNAs involved in regulation of seed development and lipid biosynthesis in yellowhorn.BMC plant biology · 2021Article
- Transcriptome and physiological analyses provide insights into the leaf epicuticular wax accumulation mechanism in yellowhorn.Horticulture research · 2021Article
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Authors and funding
19 authors at 4 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundYellowhorn (Xanthoceras sorbifolium) is a species of the Sapindaceae family native to China and is an oil tree that can withstand cold and drought conditions. A pseudomolecule-level genome assembly for this species will not only contribute to understanding the evolution of its genes and chromosomes but also bring yellowhorn breeding into the genomic era.
findingsHere, we generated 15 pseudomolecules of yellowhorn chromosomes, on which 97.04% of scaffolds were anchored, using the combined Illumina HiSeq, Pacific Biosciences Sequel, and Hi-C technologies. The length of the final yellowhorn genome assembly was 504.2 Mb with a contig N50 size of 1.04 Mb and a scaffold N50 size of 32.17 Mb. Genome annotation revealed that 68.67% of the yellowhorn genome was composed of repetitive elements. Gene modelling predicted 24,672 protein-coding genes. By comparing orthologous genes, the divergence time of yellowhorn and its close sister species longan (Dimocarpus longan) was estimated at ∼33.07 million years ago. Gene cluster and chromosome synteny analysis demonstrated that the yellowhorn genome shared a conserved genome structure with its ancestor in some chromosomes.
conclusionsThis genome assembly represents a high-quality reference genome for yellowhorn. Integrated genome annotations provide a valuable dataset for genetic and molecular research in this species. We did not detect whole-genome duplication in the genome. The yellowhorn genome carries syntenic blocks from ancient chromosomes. These data sources will enable this genome to serve as an initial platform for breeding better yellowhorn cultivars.
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