Evidence map›Paper›PMID 31241144›Full record

ArticleNicotine & tobacco research : official journal of the Society for Research on Nicotine and Tobacco2020

Pharmacogenomics of Nicotine Metabolism: Novel CYP2A6 and CYP2B6 Genetic Variation Patterns in Alaska Native and American Indian Populations.

Katrina G Claw, Julie A Beans, Seung-Been Lee, Jaedon P Avey, Patricia A Stapleton, Steven E Scherer, Ahmed El-Boraie, Rachel F Tyndale, Deborah A Nickerson, Denise A Dillard and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Nicotine & tobacco research : official journal of the Society for Research on Nicotine and Tobacco, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 19 citations in OpenAlex.

  1. Continuous Nicotine Monitors for Personal Nicotine Pharmacokinetics: A Receptor-Aware Research Agenda.Nicotine & tobacco research : official journal of the Society for Research on Nicotine and Tobacco · 2025
    Review
  2. Article
  3. Article
  4. Article
  5. Identification of Sociodemographic, Clinical, and Genetic Factors to Aid Alaska Native and American Indian People to Successfully Quit Smoking.Nicotine & tobacco research : official journal of the Society for Research on Nicotine and Tobacco · 2024
    Observational
  6. Article
  7. Smoking Patterns Among Urban Alaska Native and American Indian Adults: The Alaska EARTH 10-Year Follow-up Study.Nicotine & tobacco research : official journal of the Society for Research on Nicotine and Tobacco · 2022
    Article
  8. Article
  9. Values and Practices to Strengthen Genetic Research Partnerships with Indigenous Communities.Progress in community health partnerships : research, education, and action · 2022
    Article
  10. Article
  11. Review
  12. Sources of Interindividual Variability.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
  13. Article
  14. Review
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Katrina G ClawDepartment of Pharmaceutics, University of Washington, Seattle, WA.
Julie A BeansResearch Department, Southcentral Foundation, Anchorage, AK.
Seung-Been LeeDepartment of Genome Sciences, University of Washington, Seattle, WA.
Jaedon P AveyResearch Department, Southcentral Foundation, Anchorage, AK.
Patricia A StapletonDepartment of Environmental and Occupational Health Sciences, University of Washington, Seattle, WA.
Steven E SchererHuman Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX.
Ahmed El-BoraieDepartments of Pharmacology and Toxicology, and Psychiatry, University of Toronto, Toronto, Ontario, Canada.
Rachel F TyndaleDepartments of Pharmacology and Toxicology, and Psychiatry, University of Toronto, Toronto, Ontario, Canada.
Deborah A NickersonDepartment of Genome Sciences, University of Washington, Seattle, WA.
Denise A DillardResearch Department, Southcentral Foundation, Anchorage, AK.
Kenneth E ThummelDepartment of Pharmaceutics, University of Washington, Seattle, WA.
Renee F RobinsonResearch Department, Southcentral Foundation, Anchorage, AK.
University of Washington · USSouthcentral Foundation · USBaylor College of Medicine · USCentre for Addiction and Mental Health · CAUniversity of Toronto · CA

Funding

XENOBIOTIC BIOTRANSFORMATION AND DISPOSITIONP30ES007033 · NIEHS · UNIVERSITY OF WASHINGTON · PI Nicole Ann Errett · 1995 to 2026
$42.5M
Tracking and Evaluation CoreU54GM115371 · NIGMS · MONTANA STATE UNIVERSITY - BOZEMAN · PI HOPKINS, SCARLETT H · 2016 to 2020
$20.9M
Pharmacogenetics in Rural and Underserved PopulationsU01GM092676 · NIGMS · UNIVERSITY OF WASHINGTON · PI BURKE, WYLIE G., THUMMEL, KENNETH E. · 2010 to 2014
$9.9M
Vitamin K gene network: Variant discovery and characterizationP01GM116691 · NIGMS · UNIVERSITY OF WASHINGTON · PI THUMMEL, KENNETH E. · 2016 to 2020
$7.6M
Population-based Interventions to Improve Behavioral Health in a Tribal Healthcare SystemS06GM123545 · NIGMS · SOUTHCENTRAL FOUNDATION · PI DILLARD, DENISE A · 2017 to 2020
$1.6M
Variation of vitamin D metabolism and regulatory genes in the Yup’ik populationF32GM119237 · NIGMS · UNIVERSITY OF WASHINGTON · PI CLAW, KATRINA G · 2016 to 2018
$174k
AHRQ HHS F32 HS000079AHRQ HHS T32 HS000079CIHR FDN-154294NIEHS NIH HHS P30 ES007033NIGMS NIH HHS F32 GM119237NIGMS NIH HHS P01 GM116691NIGMS NIH HHS S06 GM123545NIGMS NIH HHS U01 GM092676NIGMS NIH HHS U54 GM115371
6 · The paper itself

Abstract

introductionAlaska Native and American Indian (AN/AI) populations have higher tobacco use prevalence than other ethnic/racial groups. Pharmacogenetic testing to tailor tobacco cessation treatment may improve cessation rates. This study characterized polymorphic variations among AN/AI people in genes associated with metabolism of nicotine and drugs used for tobacco cessation.

methodsRecruitment of AN/AI individuals represented six subgroups, five geographic subgroups throughout Alaska and a subgroup comprised of AIs from the lower 48 states living in Alaska. We sequenced the CYP2A6 and CYP2B6 genes to identify known and novel gain, reduced, and loss-of-function alleles, including structural variation (eg, gene deletions, duplications, and hybridizations).

resultsVariant allele frequencies differed substantially between AN/AI subgroups. The gene deletion CYP2A6*4 and reduced function CYP2A6*9 alleles were found at high frequency in Northern/Western subgroups and in Lower 48/Interior subgroups, respectively. The reduced function CYP2B6*6 allele was observed in all subgroups and a novel, predicted reduced function CYP2B6 variant was found at relatively high frequency in the Southeastern subgroup.

conclusionsDiverse CYP2A6 and CYP2B6 variation among the subgroups highlight the need for comprehensive pharmacogenetic testing to guide tobacco cessation therapy for AN/AI populations. IMPLICATIONS: Nicotine metabolism is largely determined by CYP2A6 genotype, and variation in CYP2A6 activity has altered the treatment success in other populations. These findings suggest pharmacogenetic-guided smoking cessation drug treatment could provide benefit to this unique population seeking tobacco cessation therapy.

Indexed as

PharmacogeneticsAdolescentAdultAgedAlaskaAlaska NativesCytochrome P-450 CYP2A6Cytochrome P-450 CYP2B6Genetic VariationGenotypeHumansIndians, North AmericanMiddle AgedNicotineSmokingSmoking CessationCYP2A6 protein, humanCYP2B6 protein, humanCytochrome P-450 CYP2A6Cytochrome P-450 CYP2B6NicotineSmoking Cessation Agents

Identifiers

PMID31241144
PMCPMC7249913
OpenAlexW2954575683

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.