Evidence map›Paper›PMID 31240237›Full record

ArticleIEEE transactions on big data2019

A Distributed Computing Platform for fMRI Big Data Analytics.

Milad Makkie, Xiang Li, Shannon Quinn, Binbin Lin, Jieping Ye, Geoffrey Mon, Tianming Liu

Abstract read
In one paragraph

Article in IEEE transactions on big data, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Review
  3. Functional Neuroimaging in the New Era of Big Data.Genomics, proteomics & bioinformatics · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Milad MakkieDepartment of Computer Science, University of Georgia, Athens, GA 30602.
Xiang LiClincial Data Science Center, Massachusetts General Hospital, Harvard Medical School, Boston, MA, 02114.
Shannon QuinnDepartment of Computer Science, University of Georgia, Athens, GA 30602.
Binbin LinDepartment of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Ml 48109.
Jieping YeDepartment of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Ml 48109.
Geoffrey MonDepartment of Computer Science, University of Georgia, Athens, GA 30602.
Tianming LiuDepartment of Computer Science, University of Georgia, Athens, GA 30602.

Funding

Assessing Large-scale Connectivities in Prenatal Cocaine Exposure Affected BrainsR01DA033393 · NIDA · UNIVERSITY OF GEORGIA · PI HU, XIAOPING P, LIU, TIANMING · 2012 to 2016
$1.6M
Assessing Large-scale Brain Connectivities in Mild Cognitive ImpairmentR01AG042599 · NIA · UNIVERSITY OF GEORGIA · PI LIU, TIANMING · 2013 to 2017
$1.4M
NIA NIH HHS R01 AG042599NIDA NIH HHS R01 DA033393
6 · The paper itself

Abstract

Since the BRAIN Initiative and Human Brain Project began, a few efforts have been made to address the computational challenges of neuroscience Big Data. The promises of these two projects were to model the complex interaction of brain and behavior and to understand and diagnose brain diseases by collecting and analyzing large quanitites of data. Archiving, analyzing, and sharing the growing neuroimaging datasets posed major challenges. New computational methods and technologies have emerged in the domain of Big Data but have not been fully adapted for use in neuroimaging. In this work, we introduce the current challenges of neuroimaging in a big data context. We review our efforts toward creating a data management system to organize the large-scale fMRI datasets, and present our novel algorithms/methods for the distributed fMRI data processing that employs Hadoop and Spark. Finally, we demonstrate the significant performance gains of our algorithms/methods to perform distributed dictionary learning.

Indexed as

apache-sparkbig data analyticsdistributed computingfMRImachine learning

Identifiers

PMID31240237
PMCPMC6592627

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.