Evidence map›Paper›PMID 31240165›Full record

ArticleJIMD reports2019

The genetic and biochemical basis of trimethylaminuria in an Irish cohort.

Samantha Doyle, James J O'Byrne, Mandy Nesbitt, Daniel N Murphy, Zaza Abidin, Niall Byrne, Gregory Pastores, Richard Kirk, Eileen P Treacy

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In one paragraph

Article in JIMD reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Samantha DoyleNational Centre for Inherited Metabolic Disorders, The Mater Misericordiae University Hospital Dublin Ireland.
James J O'ByrneNational Centre for Inherited Metabolic Disorders, The Mater Misericordiae University Hospital Dublin Ireland.
Mandy NesbittSheffield Diagnostic Genetics Service, Sheffield Children's NHS Trust Sheffield UK.
Daniel N MurphyNational Rare Diseases Office, The Mater Misericordiae University Hospital Dublin Ireland.
Zaza AbidinNational Centre for Inherited Metabolic Disorders, The Mater Misericordiae University Hospital Dublin Ireland.
Niall ByrneNational Centre for Inherited Metabolic Disorders, The Mater Misericordiae University Hospital Dublin Ireland.
Gregory PastoresNational Centre for Inherited Metabolic Disorders, The Mater Misericordiae University Hospital Dublin Ireland.
Richard KirkSheffield Diagnostic Genetics Service, Sheffield Children's NHS Trust Sheffield UK.
Eileen P TreacyNational Centre for Inherited Metabolic Disorders, The Mater Misericordiae University Hospital Dublin Ireland.
Mater Misericordiae University Hospital · IEUniversity College Dublin · IESheffield Children's NHS Foundation Trust · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundInherited trimethylaminuria (TMAU), a rare genetic disorder of hepatic metabolism of trimethylamine (TMA) causing excessive accumulation of malodorous trimethylamine (TMA), is a socially distressing disorder. Diagnosis is made by biochemical analysis of urine, with the calculation of flavin monooxygenase trimethylamine conversion capacity. Genetic testing, sequencing the entire coding region of the

methodsGenetic analysis was undertaken for 13 Irish patients with TMAU of varying phenotypic severity (three severe, six moderate, and four mild).

resultsA genetic diagnosis was made for seven patients, including for five of the nine moderate to severely affected cases. We noted the c.913G>T;p.(Glu305*) and c.458C>T;p.(Pro153Leu) mutations in this Irish population with severe TMAU which is consistent with our earlier findings in Australian and North American families of Irish and British descent.Three individuals were noted to be homozygous for the common variant haplotype c.472G>A;923A>G;p.(Glu158Lys);(Glu308Gly). We also identified three novel variants in this population, which are likely to be pathogenic: c.682G>A;p(Gly228Ser), c.694G>T:p(Asp232Tyr), and c.989G>A;p.(Gly330Glu).

conclusionUrinary biochemical analysis probably remains the first line diagnostic approach to classify the various types of TMAU.

Indexed as

fish odor syndromeFMO3 genegenetic polymorphismgenotypetrimethylaminetrimethylamine N‐oxide

Identifiers

PMID31240165
PMCPMC6498825
OpenAlexW2937235638

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.