The InterMine Android app: Cross-organism genomic data in your pocket.

Daria Komkova, Rachel Lyne, Julie Sullivan, Yo Yehudi, Gos Micklem

Abstract read

In one paragraph

Article in F1000Research, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it

0cells of the map it votes in

1citing papers in PubMed

–field-weighted citation impact

1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

The InterMine Android app: Cross-organism genomic data in your pocket.F1000Research · 2018
Article

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Daria KomkovaDepartment of Genetics, University of Cambridge, Downing Street, Cambridge, CB2 3EH, UK.ORCID 0000-0003-2428-7061

Rachel LyneDepartment of Genetics, University of Cambridge, Downing Street, Cambridge, CB2 3EH, UK.ORCID 0000-0001-8050-402X

Julie SullivanDepartment of Genetics, University of Cambridge, Downing Street, Cambridge, CB2 3EH, UK.

Yo YehudiDepartment of Genetics, University of Cambridge, Downing Street, Cambridge, CB2 3EH, UK.ORCID 0000-0003-2705-1724

Gos MicklemDepartment of Genetics, University of Cambridge, Downing Street, Cambridge, CB2 3EH, UK.ORCID 0000-0002-6883-6168

Funding

Wellcome Trust

6 · The paper itself

Abstract

InterMine is a data integration and analysis software system that has been used to create both inter-connected and stand-alone biological databases for the analysis of large and complex biological data sets. Together, the InterMine databases provide access to extensive data across multiple organisms. To provide more convenient access to these data from Android mobile devices, we have developed the InterMine app, an application that can be run on any Android mobile phone or tablet. The InterMine app provides a single interface for data access, search and exploration of the InterMine databases. It can be used to retrieve information on genes and gene lists, and their relatives across species. Simple searches can be used to access a range of data about a specific gene, while links to the InterMine databases provide access to more detailed report pages and gene list analysis tools. The InterMine app thus facilitates rapid exploration of genes across multiple organisms and kinds of data.

Indexed as

GenomicsCell PhoneDatabases, FactualSoftwareAndroid appGene searchGenomics dataInterMine

Identifiers

PMID31240100

DOI10.12688/f1000research.17005.2

PMCPMC6572867

What OpenQuestion holds

Textmetadata

LicenceCC BY

Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.