Evidence map›Paper›PMID 31239393›Full record

ArticlemSystems2019

Genomewide Assessment of Mycobacterium tuberculosis Conditionally Essential Metabolic Pathways.

Yusuke Minato, Daryl M Gohl, Joshua M Thiede, Jeremy M Chacón, William R Harcombe, Fumito Maruyama, Anthony D Baughn

Open access · goldAbstract read
In one paragraph

Article in mSystems, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers.

0numbers the graph read from it
0cells of the map it votes in
71citing papers in PubMed
5.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

71 citing papers in PubMed, 127 citations in OpenAlex.

  1. Article
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  18. Loss of the ESX-5 secretion locus inProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  19. Identification ofMicrobiology spectrum · 2025
    Article
  20. Article

11 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Yusuke MinatoDepartment of Microbiology and Immunology, University of Minnesota Medical School, Minneapolis, Minnesota, USA yminato@umn.edu abaughn@umn.edu.ORCID https://orcid.org/0000-0002-0888-8564
Daryl M GohlUniversity of Minnesota Genomics Center, Minneapolis, Minnesota, USA.ORCID https://orcid.org/0000-0002-4434-2788
Joshua M ThiedeDepartment of Microbiology and Immunology, University of Minnesota Medical School, Minneapolis, Minnesota, USA.
Jeremy M ChacónBiotechnology Institute and Department of Ecology, Evolution and Behavior, University of Minnesota, St. Paul, Minnesota, USA.
William R HarcombeBiotechnology Institute and Department of Ecology, Evolution and Behavior, University of Minnesota, St. Paul, Minnesota, USA.ORCID https://orcid.org/0000-0001-8445-2052
Fumito MaruyamaDepartment of Microbiology, Graduate School of Medicine, Kyoto University, Kyoto, Japan.ORCID https://orcid.org/0000-0003-2347-616X
Anthony D BaughnDepartment of Microbiology and Immunology, University of Minnesota Medical School, Minneapolis, Minnesota, USA yminato@umn.edu abaughn@umn.edu.ORCID https://orcid.org/0000-0003-1188-4238
University of Minnesota · USUniversity of Minnesota Medical Center · USUniversidad de La Frontera · CL

Funding

The impact of pyrazinamide on metabolism in Mycobacterium tuberculosis.R01AI123146 · NIAID · UNIVERSITY OF MINNESOTA · PI BAUGHN, ANTHONY D · 2016 to 2025
$4.3M
Systems biology and the evolutionary dynamics in a synthetic microbial communityR01GM121498 · NIGMS · UNIVERSITY OF MINNESOTA · PI HARCOMBE, WILLIAM · 2017 to 2021
$1.5M
NIAID NIH HHS R01 AI123146NIGMS NIH HHS R01 GM121498
6 · The paper itself

Abstract

A better understanding of essential cellular functions in pathogenic bacteria is important for the development of more effective antimicrobial agents. We performed a comprehensive identification of essential genes in

Indexed as

comparative genomicsmetabolic modelingmetabolismTn-seqtuberculosis

Identifiers

PMID31239393
PMCPMC6593218
OpenAlexW2955545126

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.