Evidence map›Paper›PMID 31239355›Full record

ArticleThe Journal of biological chemistry2019

The l-isoaspartate modification within protein fragments in the aging lens can promote protein aggregation.

Rebeccah A Warmack, Harrison Shawa, Kate Liu, Katia Lopez, Joseph A Loo, Joseph Horwitz, Steven G Clarke

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 21 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Rebeccah A WarmackDepartment of Chemistry and Biochemistry, UCLA, Los Angeles, California 90095; Molecular Biology Institute, UCLA, Los Angeles, California 90095.
Harrison ShawaDepartment of Chemistry and Biochemistry, UCLA, Los Angeles, California 90095; Molecular Biology Institute, UCLA, Los Angeles, California 90095.
Kate LiuDepartment of Chemistry and Biochemistry, UCLA, Los Angeles, California 90095; Molecular Biology Institute, UCLA, Los Angeles, California 90095.
Katia LopezDepartment of Chemistry and Biochemistry, UCLA, Los Angeles, California 90095; Molecular Biology Institute, UCLA, Los Angeles, California 90095.
Joseph A LooDepartment of Chemistry and Biochemistry, UCLA, Los Angeles, California 90095; Molecular Biology Institute, UCLA, Los Angeles, California 90095.
Joseph HorwitzMolecular Biology Institute, UCLA, Los Angeles, California 90095; Jules Stein Eye Institute, UCLA, Los Angeles, California 90095.
Steven G ClarkeDepartment of Chemistry and Biochemistry, UCLA, Los Angeles, California 90095; Molecular Biology Institute, UCLA, Los Angeles, California 90095. Electronic address: Clarke@mbi.ucla.edu.
University of California, Los Angeles · USDoheny Eye Institute · US

Funding

UCLA NIGMS T32 Program AssessmentT32GM007185 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI TORRES, JORGE · 1985 to 2020
$21.7M
BIOMECHANICAL ANALYSIS IN STRABISMUS SURGERYR01EY008313 · NEI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI JOSEPH Louis DEMER · 1991 to 2026
$15.0M
UV Laser for Photodissociation-Mass Spectrometry of Proteins and Protein ComplexesR01GM103479 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI LOO, JOSEPH A · 2012 to 2021
$3.2M
Analysis of Lens Crystallins and Cataractous Mutants at High Hydrostatic PressureR01EY023588 · NEI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI HORWITZ, JOSEPH · 2014 to 2018
$1.2M
NEI NIH HHS R01 EY008313NEI NIH HHS R01 EY023588NIGMS NIH HHS R01 GM103479NIGMS NIH HHS T32 GM007185
6 · The paper itself

Abstract

Transparency in the lens is accomplished by the dense packing and short-range order interactions of the crystallin proteins in fiber cells lacking organelles. These features are accompanied by a lack of protein turnover, leaving lens proteins susceptible to a number of damaging modifications and aggregation. The loss of lens transparency is attributed in part to such aggregation during aging. Among the damaging post-translational modifications that accumulate in long-lived proteins, isomerization at aspartate residues has been shown to be extensive throughout the crystallins. In this study of the human lens, we localize the accumulation of l-isoaspartate within water-soluble protein extracts primarily to crystallin peptides in high-molecular weight aggregates and show with MS that these peptides are from a variety of crystallins. To investigate the consequences of aspartate isomerization, we investigated two αA crystallin peptides

Indexed as

Protein Aggregatesalpha-Crystallin A Chainalpha-Crystallin B ChainAmino Acid SequenceChromatography, High Pressure LiquidCrystallinsHumansIsoaspartic AcidIsomerismLens, CrystallineMass SpectrometryPeptidesProtein D-Aspartate-L-Isoaspartate MethyltransferaseRecombinant Proteinsalpha-Crystallin A Chainalpha-Crystallin B ChainCrystallinsIsoaspartic AcidPCMT1 protein, humanPeptidesProtein AggregatesProtein D-Aspartate-L-Isoaspartate MethyltransferaseRecombinant ProteinsaginglensL-isoaspartatepost-translational modification (PTM)protein aggregationprotein degradation

Identifiers

PMID31239355
PMCPMC6690693
OpenAlexW2955350383

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.