Evidence map›Paper›PMID 31239342›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

Allosteric modulation of a human protein kinase with monobodies.

Adelajda Zorba, Vy Nguyen, Akiko Koide, Marc Hoemberger, Yuejiao Zheng, Steffen Kutter, Chansik Kim, Shohei Koide, Dorothee Kern

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 52 citations in OpenAlex.

  1. Conformation-specific synthetic intrabodies modulate mTOR signaling with subcellular spatial resolution.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  2. Advances in pyrazolo[1,5-RSC advances · 2025
    Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Allosteric regulation of kinase activity in living cells.bioRxiv : the preprint server for biology · 2023
    Article
  9. A biophysical framework for double-drugging kinases.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  10. Article
  11. A biophysical framework for double-drugging kinases.bioRxiv : the preprint server for biology · 2023
    Article
  12. Review
  13. Article
  14. Review
  15. Inhibition of RAS-driven signaling and tumorigenesis with a pan-RAS monobody targeting the Switch I/II pocket.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  16. Review
  17. Chemical tools for dissecting cell division.Nature chemical biology · 2021
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Adelajda ZorbaDepartment of Biochemistry, Brandeis University, Waltham, MA 02454.ORCID 0000-0002-4452-8419
Vy NguyenDepartment of Biochemistry, Brandeis University, Waltham, MA 02454.
Akiko KoidePerlmutter Cancer Center, New York University Langone Health, New York, NY 10016.
Marc HoembergerDepartment of Biochemistry, Brandeis University, Waltham, MA 02454.
Yuejiao ZhengDepartment of Biochemistry, Brandeis University, Waltham, MA 02454.
Steffen KutterDepartment of Biochemistry, Brandeis University, Waltham, MA 02454.
Chansik KimDepartment of Biochemistry, Brandeis University, Waltham, MA 02454.
Shohei KoidePerlmutter Cancer Center, New York University Langone Health, New York, NY 10016; dkern@brandeis.edu Shohei.Koide@nyumc.org.
Dorothee KernDepartment of Biochemistry, Brandeis University, Waltham, MA 02454; dkern@brandeis.edu Shohei.Koide@nyumc.org.
Howard Hughes Medical Institute · USNYU Langone Health · US

Funding

VIRAL ONCOLOGY CORE FACILITYP30CA014599 · NCI · UNIVERSITY OF CHICAGO · PI CHIEN-MIN KAO · 1985 to 2026
$122.1M
X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
Rational generation of directed protein-capture reagentsR01GM090324 · NIGMS · UNIVERSITY OF CHICAGO · PI KOIDE, SHOHEI · 2009 to 2013
$2.6M
Molecular mechanisms of SHP2 signaling dissected with designer binding proteinsR01CA194864 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI KOIDE, SHOHEI · 2016 to 2020
$1.8M
Collaborative experimental & computational studies of conformational transitionsR01GM100966 · NIGMS · BRANDEIS UNIVERSITY · PI HAGAN, MICHAEL F, KERN, DOROTHEE · 2013 to 2016
$1.2M
Howard Hughes Medical InstituteNCI NIH HHS P30 CA014599NCI NIH HHS R01 CA194864NIGMS NIH HHS P41 GM103393NIGMS NIH HHS R01 GM090324NIGMS NIH HHS R01 GM100966
6 · The paper itself

Abstract

Despite being the subject of intense effort and scrutiny, kinases have proven to be consistently challenging targets in inhibitor drug design. A key obstacle has been promiscuity and consequent adverse effects of drugs targeting the ATP binding site. Here we introduce an approach to controlling kinase activity by using monobodies that bind to the highly specific regulatory allosteric pocket of the oncoprotein Aurora A (AurA) kinase, thereby offering the potential for more specific kinase modulators. Strikingly, we identify a series of highly specific monobodies acting either as strong kinase inhibitors or activators via differential recognition of structural motifs in the allosteric pocket. X-ray crystal structures comparing AurA bound to activating vs inhibiting monobodies reveal the atomistic mechanism underlying allosteric modulation. The results reveal 3 major advantages of targeting allosteric vs orthosteric sites: extreme selectivity, ability to inhibit as well as activate, and avoidance of competing with ATP that is present at high concentrations in the cells. We envision that exploiting allosteric networks for inhibition or activation will provide a general, powerful pathway toward rational drug design.

Indexed as

Adenosine TriphosphateAllosteric RegulationAurora Kinase AAurora Kinase BBinding SitesCarrier ProteinsCrystallography, X-RayDrug DesignFibronectin Type III DomainHumansProtein ConformationProtein Kinase InhibitorsProtein KinasesAdenosine TriphosphateAURKA protein, humanAURKB protein, humanAurora Kinase AAurora Kinase BCarrier ProteinsProtein Kinase InhibitorsProtein Kinasesallosteric drugsallosteryAurora Akinasemonobody

Identifiers

PMID31239342
PMCPMC6628680
OpenAlexW2953521742

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.