Evidence map›Paper›PMID 31238512›Full record

ArticleMetabolites2019

Mass Spectrometry Data Repository Enhances Novel Metabolite Discoveries with Advances in Computational Metabolomics.

Hiroshi Tsugawa, Aya Satoh, Haruki Uchino, Tomas Cajka, Makoto Arita, Masanori Arita

Open access · goldAbstract read
In one paragraph

Article in Metabolites, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 48 citations in OpenAlex.

  1. Exogenous Melatonin Confers Salt-Alkali Tolerance inPlants (Basel, Switzerland) · 2026
    Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Endometabolic profiling of pigmented glacier ice algae: the impact of sample processing.Metabolomics : Official journal of the Metabolomic Society · 2024
    Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Lipidomic analysis of moss speciesPlant-environment interactions (Hoboken, N.J.) · 2022
    Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Hiroshi TsugawaMetabolome informatics research team, RIKEN Center for Sustainable Resource Science, Yokohama 230-0045, Japan. hiroshi.tsugawa@riken.jp.ORCID 0000-0002-2015-3958
Aya SatohMetabolome informatics research team, RIKEN Center for Sustainable Resource Science, Yokohama 230-0045, Japan. aya.hayaishi@riken.jp.
Haruki UchinoLaboratory for metabolomics, RIKEN Center for Integrative Medical Sciences, Yokohama 230-0045, Japan. haruki-uchino@keio.jp.
Tomas CajkaDepartment of Metabolomics, Institute of Physiology of the Czech Academy of Sciences, Videnska 1083, 14220 Prague, Czech Republic. tomas.cajka@fgu.cas.cz.ORCID 0000-0002-9728-3355
Makoto AritaLaboratory for metabolomics, RIKEN Center for Integrative Medical Sciences, Yokohama 230-0045, Japan. makoto.arita@riken.jp.
Masanori AritaMetabolome informatics research team, RIKEN Center for Sustainable Resource Science, Yokohama 230-0045, Japan. arita@nig.ac.jp.
National Institute of Genetics · JPRIKEN Center for Sustainable Resource Science · JPCzech Academy of Sciences · CZKeio University · JP

Funding

Japan Science and Technology Agency JST National Bioscience Database CenterJapan Society for the Promotion of Science 15H05897, 15H05898, 17H03621, 18H02432, 18K19155
6 · The paper itself

Abstract

Mass spectrometry raw data repositories, including Metabolomics Workbench and MetaboLights, have contributed to increased transparency in metabolomics studies and the discovery of novel insights in biology by reanalysis with updated computational metabolomics tools. Herein, we reanalyzed the previously published lipidomics data from nine algal species, resulting in the annotation of 1437 lipids achieving a 40% increase in annotation compared to the previous results. Specifically, diacylglyceryl-carboxyhydroxy-methylcholine (DGCC) in

Indexed as

computational metabolomicsdata processingdata repositorylipidomicsreanalysis

Identifiers

PMID31238512
PMCPMC6630716
OpenAlexW2952713407

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.