Evidence map›Paper›PMID 31237565›Full record

ArticleeLife2019

Unified single-cell analysis of testis gene regulation and pathology in five mouse strains.

Min Jung, Daniel Wells, Jannette Rusch, Suhaira Ahmad, Jonathan Marchini, Simon R Myers, Donald F Conrad

Open access · goldAbstract read
In one paragraph

Article in eLife, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 91 papers.

0numbers the graph read from it
0cells of the map it votes in
91citing papers in PubMed
7.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

91 citing papers in PubMed, 152 citations in OpenAlex.

  1. Article
  2. Why recombination hotspots?PLoS genetics · 2026
    Review
  3. NSUN7 Regulates Sperm Flagella Formation at All Stages of Spermiogenesis.International journal of molecular sciences · 2025
    Article
  4. Review
  5. Review
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  19. The role(s) of NF-Y in development and differentiation.Cell death and differentiation · 2025
    Review
  20. Article

31 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Min Jung *Department of Genetics, Washington University School of Medicine, St. Louis, United States.
Daniel Wells *The Wellcome Centre for Human Genetics, University of Oxford, Oxford, United Kingdom.ORCID 0000-0002-2007-8978
Jannette RuschDepartment of Genetics, Washington University School of Medicine, St. Louis, United States.
Suhaira AhmadDepartment of Genetics, Washington University School of Medicine, St. Louis, United States.
Jonathan MarchiniThe Wellcome Centre for Human Genetics, University of Oxford, Oxford, United Kingdom.ORCID 0000-0003-0610-8322
Simon R MyersThe Wellcome Centre for Human Genetics, University of Oxford, Oxford, United Kingdom.
Donald F ConradDepartment of Genetics, Washington University School of Medicine, St. Louis, United States.ORCID 0000-0003-3828-8970
Centre for Human Genetics · GBWashington University in St. Louis · USOregon National Primate Research Center · US

Funding

Upgrade of confocal microscopy at the Oregon National Primate Research CenterP51OD011092 · OD · OREGON HEALTH & SCIENCE UNIVERSITY · PI Bonnie J. Nagel · 2012 to 2026
$203.9M
Washington University Center for Cellular ImagingP30CA091842 · NCI · WASHINGTON UNIVERSITY · PI AIMEE S JAMES · 2001 to 2026
$128.0M
GENOMICS OF SPERMATOGENIC IMPAIRMENTR01HD078641 · NICHD · WASHINGTON UNIVERSITY · PI Kenneth Ivan Aston, DONALD F. CONRAD · 2014 to 2026
$6.3M
Analysis of de novo mutation from sequencing of related individuals and cellsR01HG007178 · NHGRI · WASHINGTON UNIVERSITY · PI CONRAD, DONALD F. · 2014 to 2018
$2.6M
MODELING THE EFFECTS OF STRUCTURAL VARIATION IN GTEX DATA AND MENDELIAN DISEASER01MH101810 · NIMH · WASHINGTON UNIVERSITY · PI CONRAD, DONALD F. · 2013 to 2016
$1.3M
Eunice Kennedy Shriver National Institute of Child Health and Human Development R01HD078641European Research Council 617306NCI NIH HHS P30 CA091842NHGRI NIH HHS R01 HG007178NICHD NIH HHS R01 HD078641NIH HHS P51 OD011092NIMH NIH HHS R01 MH101810NIMH NIH HHS R01MH101810Wellcome 098387/Z/12/ZWellcome 109109/Z/15/ZWellcome 212284/Z/18/ZWellcome Trust
6 · The paper itself

Abstract

To fully exploit the potential of single-cell functional genomics in the study of development and disease, robust methods are needed to simplify the analysis of data across samples, time-points and individuals. Here we introduce a model-based factor analysis method, SDA, to analyze a novel 57,600 cell dataset from the testes of wild-type mice and mice with gonadal defects due to disruption of the genes

Indexed as

2',3'-Cyclic Nucleotide 3'-PhosphodiesteraseAnimalsCell Cycle ProteinsCullin ProteinsGene Expression RegulationGenomicsMaleMeiosisMiceMice, KnockoutMutL ProteinsNucleotide MotifsSertoli CellsSingle-Cell AnalysisSpermatogenesisTestis2',3'-Cyclic Nucleotide 3'-PhosphodiesteraseCell Cycle ProteinsCnp protein, mouseCul4a protein, mouseCullin ProteinsMlh3 protein, mouseMutL ProteinsNohma protein, mousecomputational biologyfactor analysisgene regulationgeneticsgenomicsinfertilitymeiosismousesingle-cellsystems biologytestis

Identifiers

PMID31237565
PMCPMC6615865
OpenAlexW2954018630

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.