Evidence map›Paper›PMID 31237236›Full record

ArticleeLife2019

Massive antibody discovery used to probe structure-function relationships of the essential outer membrane protein LptD.

Kelly M Storek, Joyce Chan, Rajesh Vij, Nancy Chiang, Zhonghua Lin, Jack Bevers, Christopher M Koth, Jean-Michel Vernes, Y Gloria Meng, JianPing Yin and 12 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 35 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Resurfacing promotes antibacterial activity of a lipid A-binding nanobody.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  7. Immobile lipopolysaccharides and outer membrane proteins differentially segregate in growingProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Components Subcellular Localization: Cell Surface Exposure.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  13. Review
  14. Outsmarting Pathogens with Antibody Engineering.Annual review of chemical and biomolecular engineering · 2023
    Review
  15. Article
  16. Review
  17. Article
  18. Physical properties of the bacterial outer membrane.Nature reviews. Microbiology · 2022
    Review
  19. Article
  20. Mining for novel antibiotics.Current opinion in microbiology · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Kelly M StorekDepartment of Infectious Diseases, Genentech, Inc, South San Francisco, United States.
Joyce ChanDepartment of Biochemical and Cellular Pharmacology, Genentech, Inc, South San Francisco, United States.
Rajesh VijDepartment of Antibody Engineering, Genentech, Inc, South San Francisco, United States.
Nancy ChiangDepartment of Antibody Engineering, Genentech, Inc, South San Francisco, United States.
Zhonghua LinDepartment of Antibody Engineering, Genentech, Inc, South San Francisco, United States.
Jack BeversDepartment of Antibody Engineering, Genentech, Inc, South San Francisco, United States.
Christopher M KothDepartment of Structural Biology, Genentech, Inc, South San Francisco, United States.
Jean-Michel VernesDepartment of Biochemical and Cellular Pharmacology, Genentech, Inc, South San Francisco, United States.
Y Gloria MengDepartment of Biochemical and Cellular Pharmacology, Genentech, Inc, South San Francisco, United States.
JianPing YinDepartment of Structural Biology, Genentech, Inc, South San Francisco, United States.
Heidi WallweberDepartment of Structural Biology, Genentech, Inc, South San Francisco, United States.
Olivier DalmasDepartment of Structural Biology, Genentech, Inc, South San Francisco, United States.
Stephanie ShriverDepartment of Biomolecular Resources, Genentech, Inc, South San Francisco, United States.
Christine TamDepartment of Biomolecular Resources, Genentech, Inc, South San Francisco, United States.
Kellen SchneiderDepartment of Antibody Engineering, Genentech, Inc, South San Francisco, United States.
Dhaya SeshasayeeDepartment of Antibody Engineering, Genentech, Inc, South San Francisco, United States.
Gerald NakamuraDepartment of Antibody Engineering, Genentech, Inc, South San Francisco, United States.
Peter A SmithDepartment of Infectious Diseases, Genentech, Inc, South San Francisco, United States.
Jian PayandehDepartment of Structural Biology, Genentech, Inc, South San Francisco, United States.
James T KoerberDepartment of Antibody Engineering, Genentech, Inc, South San Francisco, United States.
Laetitia Comps-AgrarDepartment of Biochemical and Cellular Pharmacology, Genentech, Inc, South San Francisco, United States.
Steven T RutherfordDepartment of Infectious Diseases, Genentech, Inc, South San Francisco, United States.ORCID 0000-0002-4758-4248

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Outer membrane proteins (OMPs) in Gram-negative bacteria dictate permeability of metabolites, antibiotics, and toxins. Elucidating the structure-function relationships governing OMPs within native membrane environments remains challenging. We constructed a diverse library of >3000 monoclonal antibodies to assess the roles of extracellular loops (ECLs) in LptD, an essential OMP that inserts lipopolysaccharide into the outer membrane of

Indexed as

AnimalsAnti-Bacterial AgentsAntibodies, MonoclonalBacterial Outer Membrane ProteinsBinding SitesEpitope MappingEpitopesEscherichia coliEscherichia coli ProteinsMice, Inbred BALB CProtein Structure, SecondaryRats, Sprague-DawleyStructure-Activity RelationshipAnti-Bacterial AgentsAntibodies, MonoclonalBacterial Outer Membrane ProteinsEpitopesEscherichia coli ProteinsLptD protein, E coliE. coliinfectious diseaseK. pneumoniaeLPSLptDmicrobiologymolecular biophysicsmonoclonal antibodiesouter membranestructural biology

Identifiers

PMID31237236
PMCPMC6592684
OpenAlexW2954926818

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.