ArticleApplications in plant sciences2019
A customized nuclear target enrichment approach for developing a phylogenomic baseline for
Article in Applications in plant sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
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Who cites it
25 citing papers in PubMed.
- Enrichment Probe Sets Combining Universal and Lineage-Specific Targets Help Resolve Recalcitrant Lineages.Molecular ecology resources · 2026Article
- A robust phylogenomic framework supports a revised intrafamilial classification of Urticaceae.Plant diversity · 2026Article
- Urticaceae542 as a novel probe set combining universal and lineage-specific loci for phylogenomics of Urticaceae.Scientific reports · 2025Article
- There and back again: historical biogeography of neotropical magnolias based on high-throughput sequencing.BMC ecology and evolution · 2025Article
- PhytoKeys · 2025Article
- Genomic, spatial and morphometric data for discrimination of four species in the Mediterranean Tamus clade of yams (Dioscorea, Dioscoreaceae).Annals of botany · 2023Article
- A Bioinformatic Pipeline to Estimate Ploidy Level from Target Capture Sequence Data Obtained from Herbarium Specimens.Methods in molecular biology (Clifton, N.J.) · 2023Article
- Taxon-specific or universal? Using target capture to study the evolutionary history of rapid radiations.Molecular ecology resources · 2022Article
- A Comprehensive Phylogenomic Platform for Exploring the Angiosperm Tree of Life.Systematic biology · 2022Article
- A nuclear target sequence capture probe set for phylogeny reconstruction of the charismatic plant family Bignoniaceae.Frontiers in genetics · 2022Article
- A customised target capture sequencing tool for molecular identification of Aloe vera and relatives.Scientific reports · 2021Article
- Exploring Angiosperms353: Developing and applying a universal toolkit for flowering plant phylogenomics.Applications in plant sciences · 2021Article
- The best of both worlds: Combining lineage-specific and universal bait sets in target-enrichment hybridization reactions.Applications in plant sciences · 2021Article
- Review
- A two-tier bioinformatic pipeline to develop probes for target capture of nuclear loci with applications in Melastomataceae.Applications in plant sciences · 2020Article
- Strategies for reducing per-sample costs in target capture sequencing for phylogenomics and population genomics in plants.Applications in plant sciences · 2020Review
- Unraveling the Spiraling Radiation: A Phylogenomic Analysis of NeotropicalFrontiers in plant science · 2020Article
- Reconstructing the Complex Evolutionary History of the PapuasianFrontiers in plant science · 2020Article
- A customized nuclear target enrichment approach for developing a phylogenomic baseline forApplications in plant sciences · 2019Article
- A Target Capture-Based Method to Estimate Ploidy From Herbarium Specimens.Frontiers in plant science · 2019Article
Corrections and comments
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Authors and funding
9 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
premiseWe developed a target enrichment panel for phylogenomic studies of
methodsOur bait panel comprises 260 low- to single-copy nuclear genes targeted to work in
resultsThe custom panel retrieved ~94% of targets and >80% of full gene length from 88% and 68% of samples, respectively. It has minimal gene overlap with existing panels designed for angiosperm-wide studies and generally recovers longer and more variable targets. Pilot phylogenomic analyses consistently resolve most deep and recent relationships with strong support across analyses and point to revised relationships between the crop species DISCUSSION: Our customized panel reliably retrieves targeted loci from
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