ArticleEcology and evolution2019
Comparing Pool-seq, Rapture, and GBS genotyping for inferring weak population structure: The American lobster (
Article in Ecology and evolution, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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Who cites it
19 citing papers in PubMed.
- Management and conservation implications of cryptic population substructure for two commercially exploited fishes (Merluccius spp.) in southern Africa.Molecular ecology resources · 2025Article
- Dynamic Outlier Slicing Allows Broader Exploration of Adaptive Divergence: A Comparison of Individual Genome and Pool-Seq Data Linked to Humic Adaptation in Perch.Molecular ecology · 2025Article
- Article
- Sampling strategies for genotyping common bean (Frontiers in plant science · 2024Article
- Genetic Drift Shapes the Evolution of a Highly Dynamic Metapopulation.Molecular biology and evolution · 2022Article
- Genomic differentiation in Pacific cod using Pool-Seq.Evolutionary applications · 2022Article
- Identification of loci controlling timing of stem elongation in red clover using genotyping by sequencing of pooled phenotypic extremes.Molecular genetics and genomics : MGG · 2022Article
- Landscape genomics of the American lobster (Homarus americanus).Molecular ecology · 2022Article
- Article
- Application of Omics Tools in Designing and Monitoring Marine Protected Areas For a Sustainable Blue Economy.Frontiers in genetics · 2022Article
- Influence of environmental conditions at spawning sites and migration routes on adaptive variation and population connectivity in Chinook salmon.Ecology and evolution · 2021Article
- Exploiting genomic synteny in Felidae: cross-species genome alignments and SNV discovery can aid conservation management.BMC genomics · 2021Article
- The American lobster genome reveals insights on longevity, neural, and immune adaptations.Science advances · 2021Article
- Isolation and characterization of SNP markers of rainbow trout (Onchorhynchus mykiss Walbaum, 1792) from transcriptomic sequences.Molecular biology reports · 2021Article
- Multi-model seascape genomics identifies distinct environmental drivers of selection among sympatric marine species.BMC evolutionary biology · 2020Article
- A targeted genotyping-by-sequencing tool (Rapture) for genomics-assisted breeding in oat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- Genomic, Transcriptomic and Epigenomic Tools to Study the Domestication of Plants and Animals: A Field Guide for Beginners.Frontiers in genetics · 2020Review
- Exploring a Pool-seq-only approach for gaining population genomic insights in nonmodel species.Ecology and evolution · 2019Article
- Comparing Pool-seq, Rapture, and GBS genotyping for inferring weak population structure: The American lobster (Ecology and evolution · 2019Article
Corrections and comments
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7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Unraveling genetic population structure is challenging in species potentially characterized by large population size and high dispersal rates, often resulting in weak genetic differentiation. Genotyping a large number of samples can improve the detection of subtle genetic structure, but this may substantially increase sequencing cost and downstream bioinformatics computational time. To overcome this challenge, alternative, cost-effective sequencing approaches, namely Pool-seq and Rapture, have been developed. We empirically measured the power of resolution and congruence of these two methods in documenting weak population structure in nonmodel species with high gene flow comparatively to a conventional genotyping-by-sequencing (GBS) approach. For this, we used the American lobster (
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